View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1962_low_5 (Length: 374)
Name: NF1962_low_5
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 11179932 - 11179600
Alignment:
| Q |
16 |
gcaagatcacgcttaagagatgatcctcttcattcatttatagtgccattcaactccattcaattctgtgctcaccacaattagctacttgttcaagcca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11179932 |
gcaagatcacgcttaagagatgatcctcttcattcatttatagtgccattcaa----------ttctgtgctcaccacaattagctacttgttcaagcca |
11179843 |
T |
|
| Q |
116 |
gagccatgtcgaaatatctaataacttgcaaaatatttgggcgccttatttcgatatcaaaattaaaagctctatgctgtttgttcgatcccttcttttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11179842 |
gagccatgtcgaaatatctaataacttgcaaaatatttgggcgccttatttcgatatcaaaattaaaagctctatgctgtttgttcgatcccttcttttc |
11179743 |
T |
|
| Q |
216 |
agacgttggttacattacaaggaacctttatatattcaattatggcgtcgtcaacattcttgacatttctacacttctcaagaataagcttgcaaaaata |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11179742 |
agacgttggttacattaaaaggaacctttatatattcaattatggcgtcgtcaacattcttgacatttctacacttctcaagaataagcttgcaaaaata |
11179643 |
T |
|
| Q |
316 |
atctgaccaagcctatttaatttgaagatttgctatgagtatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11179642 |
atctgaccaagcctatttaatttgaagatttgctatgagtatg |
11179600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University