View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1962_low_9 (Length: 250)
Name: NF1962_low_9
Description: NF1962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1962_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39580549 - 39580310
Alignment:
| Q |
1 |
agaaagtggctaccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctg |
100 |
Q |
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| T |
39580549 |
agaaagtggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctg |
39580450 |
T |
|
| Q |
101 |
atggtccaaattcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39580449 |
atggtccaaattcaaatatacatattggtccagacgctctttataaaagtgccaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgt |
39580350 |
T |
|
| Q |
201 |
tcctgtgcaaaagaatattgatcattacctcaggcttcat |
240 |
Q |
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| T |
39580349 |
tcctgtggaaaagaatattgatcattacctcaggcttcat |
39580310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 39544147 - 39543918
Alignment:
| Q |
11 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
110 |
Q |
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|||||||||||||||| || ||||||||||| |||||||||||||||| ||||| || ||| |||| |||||||||| | || || ||| |||||||| |
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| T |
39544147 |
taccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgcaaataatacatatgaaggtccaaa |
39544048 |
T |
|
| Q |
111 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtgcaa |
210 |
Q |
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| T |
39544047 |
ttcaaatatatatattgctccggacgctgtttatgaaactgccaaagagagcaaaagcggttctaaaggtttaaacataagttggagtgttcctgttgaa |
39543948 |
T |
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| Q |
211 |
aagaatattgatcattacctcaggcttcat |
240 |
Q |
| |
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|||| ||||||||||| ||| ||||||||| |
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| T |
39543947 |
aagagtattgatcatttccttaggcttcat |
39543918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 39511101 - 39510879
Alignment:
| Q |
15 |
agatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaattca |
114 |
Q |
| |
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||||||||| ||||| ||||||||||| || || |||| ||||| |||||| |||||||| || | ||||| ||||||||||||||||||||||||| |
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| T |
39511101 |
agatgacagatacataactaatccacaaaatgcgaagattggttcctttgg---tgatattaaacacgctgcaaatgatgaatctgatggtccaaattca |
39511005 |
T |
|
| Q |
115 |
aatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtgcaaaaga |
214 |
Q |
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| |||| ||||||||||||| | ||||||| | |||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
39511004 |
agtatatatattggtccagatattgtttataaaactggccaagagagtgcaaacggttcaaaaggtttaaacataagttggagtgttcctgtgcaaaaaa |
39510905 |
T |
|
| Q |
215 |
atattgatcattacctcaggcttcat |
240 |
Q |
| |
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| | ||||||| ||||||||||||| |
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| T |
39510904 |
ctgtagatcatttcctcaggcttcat |
39510879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 39524851 - 39524622
Alignment:
| Q |
11 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
110 |
Q |
| |
|
||||||||||||| || || ||| |||| || |||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||| || | |||| |
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| T |
39524851 |
taccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatgaatctgttgattcaaa |
39524752 |
T |
|
| Q |
111 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagtaaaaatggttcaaacggtttaaacataagttggagtgttcctgtgcaa |
210 |
Q |
| |
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|||||||| | | || |||||||| | ||||||| | || ||||| |||| |||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
39524751 |
ttcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttggagtgttcctgtggag |
39524652 |
T |
|
| Q |
211 |
aagaatattgatcattacctcaggcttcat |
240 |
Q |
| |
|
|||||||| ||||||| ||| | ||||||| |
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| T |
39524651 |
aagaatatagatcatttccttatgcttcat |
39524622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 39575993 - 39575841
Alignment:
| Q |
11 |
taccagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaa |
110 |
Q |
| |
|
||||||||||||| || | ||||||| ||| |||||||||||| | | ||||| ||||||||| |||||||||| |||| |||||||||||||| |
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| T |
39575993 |
taccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatacgtctgatggtccaaa |
39575894 |
T |
|
| Q |
111 |
ttcaaatatacatattggtccagacgctctttataatagtggcaaagagagta |
163 |
Q |
| |
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||||||| | |||||| |||||| | ||||||| | |||||||||||||| |
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| T |
39575893 |
ttcaaatcaatatattgctccagatattgtttataaaactggcaaagagagta |
39575841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 39521348 - 39521227
Alignment:
| Q |
14 |
cagatgacagttacatcactaatccacataacgctaagaatggttactttggaggtgatattatacgcactgcaggtgatgaatctgatggtccaaattc |
113 |
Q |
| |
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||||||||||||| | ||||||||||| |||||||||||| | | ||||| | | ||||| |||||||||| |||| |||||||||||||||||| |
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| T |
39521348 |
cagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatacatctgatggtccaaattc |
39521249 |
T |
|
| Q |
114 |
aaatatacatattggtccagac |
135 |
Q |
| |
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|||| | |||||| ||||||| |
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| T |
39521248 |
aaatcaatatattgctccagac |
39521227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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