View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963-Insertion-2 (Length: 664)
Name: NF1963-Insertion-2
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 6 - 663
Target Start/End: Complemental strand, 2392317 - 2391660
Alignment:
| Q |
6 |
caaatacaagagggcccaacatgtctagcataaggttacatcagtatagagggcgggatattcaaattggaaggttacaaaaataagtagnnnnnnngag |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2392317 |
caaatacaagagggcccaacatgtctagcataaggttacatcagtatagagggcgggatattcaaattggaaggttacaaaaataagtagtttttttgag |
2392218 |
T |
|
| Q |
106 |
ggggcggttctggcttaggataaaagggggacatggcttcaggataaagggatcacttttacaaacaccaaggacatatcgcccttgacgtgaacaatac |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392217 |
ggggcggttctggcttaggataaaagggggacatggcttcaggataaagggatcacttttacaaacaccaaggacatatcgcccttgacgtgaacaatac |
2392118 |
T |
|
| Q |
206 |
caccaatgataggaagtaggaacgatcgtaattcttgcaagtacagtttgctaagcttttcacttccttgttgtcccaaggatataaagctttagcttcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392117 |
caccaatgataggaagtaggaacgatcgtaattcttgcaagtacagtttgctaagcttttcacttccttgttgtcccaaggatataaagctttagcttcc |
2392018 |
T |
|
| Q |
306 |
atagtttgagtttgtgaattggaatggttcacgcacccacttatctatagtgatcaatatctattatcctacttgcaagtgtatgtcccgttggtttttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392017 |
atagtttgagtttgtgaattggaatggttcacgcacccacttatctatagtgatcaatatctattatcctacttgcaagtgtatgtcccgttggtttttt |
2391918 |
T |
|
| Q |
406 |
gtgtcaaatatcaggctgcatgcatttgaatgtaagttgtaacctgcttcttcgtttgttagcaacattagtccgtcgtacatgatttttatgcattatg |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391917 |
gtgtcaaatatcaggctgcatgcatttgaatgtaagttgtaacctgcttcttcgtttgttagcaacattagtccgtcgtacatgatttttatgcattatg |
2391818 |
T |
|
| Q |
506 |
tatctattgttactttgtaacaattaattatgaagttagttactgtatctgtataatatctatctatttacatatataatatattgcctcactccaattt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391817 |
tatctattgttactttgtaacaattaattatgaagttagttactgtatctgtataatatctatctatttacatatataatatattgcctcactccaattt |
2391718 |
T |
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| Q |
606 |
tcgtcgtagaacatagccttgataacttctttgacatgggtaggggcaacaaagttgg |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2391717 |
tcgtcgtagaacatagccttgataacttctttgacatgggtaggggcaacaaaattgg |
2391660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 376 - 564
Target Start/End: Original strand, 2364981 - 2365160
Alignment:
| Q |
376 |
acttgcaagtgtatgtcccgttggttttttgtgtcaaatatcaggctgcatgcatttgaatgtaagttgtaacctgcttcttcgtttgttagcaacatta |
475 |
Q |
| |
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|||| |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
2364981 |
acttacaagtgtatgtctcattggttttttgtgtcaaatatccggctgcatgcatttgaatgtaa-------cctgcatcttcgtttgatagcaacattt |
2365073 |
T |
|
| Q |
476 |
gtccgtcgtacatgatttttatgcattatgtatctattgttactttgtaacaattaattatgaagttagttactgtatctgtataatat |
564 |
Q |
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|| || || |||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||| |
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| T |
2365074 |
ttctgttgtgtatgatttttatgcattgtgtatctatt--tactttgtaacaattaactatgaagttagttactgtctctctataatat |
2365160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 4250871 - 4250915
Alignment:
| Q |
314 |
agtttgtgaattggaatggttcacgcacccacttatctatagtga |
358 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
4250871 |
agtttgtgaattggaatggttcacgtactcacttatctatagtga |
4250915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 4250798 - 4250832
Alignment:
| Q |
248 |
acagtttgctaagcttttcacttccttgttgtccc |
282 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4250798 |
acagtttgctaagcttttcacttccttgttgtccc |
4250832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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