View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963-Insertion-3 (Length: 431)
Name: NF1963-Insertion-3
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963-Insertion-3 |
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| [»] scaffold0519 (2 HSPs) |
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Alignment Details
Target: scaffold0519 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 1248 - 1395
Alignment:
| Q |
245 |
actttaatgtgtgtttagaagattacatgatttctcatttgtaatttgttgatgatacattgattatgggtaaaatagttggtctaacattagagaaata |
344 |
Q |
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| T |
1248 |
actttaatgtgtgtttagaagattacatgatttctcatttgtaatttgttgatgatacattgattatgggtaaaatagttggtctaacattagagaaata |
1347 |
T |
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| Q |
345 |
agatgaatattcttttatttgaatttctttcagaactcaaaatgaatt |
392 |
Q |
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| T |
1348 |
agatgaatattcttttatttgaatttctttcggaactcaaaatgaatt |
1395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0519; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 1010 - 1178
Alignment:
| Q |
8 |
agtgagattgttgcgattcagtgatgattaaattgaattttccaatatgacggaggtaatgtatcttgaaatgtgttagttcacccacatcaacaatgct |
107 |
Q |
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| T |
1010 |
agtgagattattgggattcagtgatgattaaattgaattttccaacatgacgtaggtaatgtatcttgaaatgtgttaattcacccacaacaacaatgtt |
1109 |
T |
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| Q |
108 |
atttttt-ggagttccactatataattttctttgaggtggggactttgtcaggacgaccctctacctac |
175 |
Q |
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| T |
1110 |
attttttgggagttccactatataattttctttgaggtgaggactttttcaggtcgaccctctacctac |
1178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 245 - 392
Target Start/End: Complemental strand, 11233177 - 11233030
Alignment:
| Q |
245 |
actttaatgtgtgtttagaagattacatgatttctcatttgtaatttgttgatgatacattgattatgggtaaaatagttggtctaacattagagaaata |
344 |
Q |
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| T |
11233177 |
actttaatgtgtgtttagaagattacatgatttctcatttgtaatttgttgatgatacattgattatgggtaaaatagttggtctaacattagagaaata |
11233078 |
T |
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| Q |
345 |
agatgaatattcttttatttgaatttctttcagaactcaaaatgaatt |
392 |
Q |
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| T |
11233077 |
agatgaatattcttttatttgaatttctttcggaactcaaaatgaatt |
11233030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 11233414 - 11233247
Alignment:
| Q |
8 |
agtgagattgttgcgattcagtgatgattaaattgaattttccaatatgacggaggtaatgtatcttgaaatgtgttagttcacccacatcaacaatgct |
107 |
Q |
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| T |
11233414 |
agtgagattattgggattcagtgatgattaaattgaattttccaacatgacgtaggtaatgtatcttgaaatgtgttaattcacccacaacaacaatgtt |
11233315 |
T |
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| Q |
108 |
attttttggagttccactatataattttctttgaggtggggactttgtcaggacgaccctctacctac |
175 |
Q |
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| T |
11233314 |
atttttgggagttccactatataattttctttgaggtgaggactttttcaggtcgaccctctacctac |
11233247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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