View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1963-Insertion-4 (Length: 837)
Name: NF1963-Insertion-4
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 457 - 830
Target Start/End: Original strand, 35867843 - 35868216
Alignment:
| Q |
457 |
agcagatgctatggggcttggaaagaccatcatgaccatatcacttctcgttgcccattcaggaaagggtggatcattaggcagtcaacctatcgctcag |
556 |
Q |
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| T |
35867843 |
agcagatgctatggggcttggaaagaccatcatgaccatatcacttctcgttgcccattcaggaaagggtggatcattaggcagtcaacctatcgctcag |
35867942 |
T |
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| Q |
557 |
tcctttattgaaggtggtgaagttagtgacactgatacaattccaaatctttcaaaggttccaaagaagacaaccaaatttactggttttgataaatcga |
656 |
Q |
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| T |
35867943 |
tcctttattgaaggtggtgaagttagtgacactgatacaattccaaatctttcaaaggttccaaagaagacaaccaaatttactggttttgataaatcga |
35868042 |
T |
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| Q |
657 |
cgaagaaaaacacttctctaacaagcggtggcaacttgataatatgtcctatgactcttcttgggcagtggaaggtattaacatgatgtgactatttggt |
756 |
Q |
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| T |
35868043 |
cgaagaaaaacacttctctaacaagcggtggcaacttgataatatgtcctatgactcttcttgggcagtggaaggtattaacatgatgtgactatttggt |
35868142 |
T |
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| Q |
757 |
tactgtatttctttacttaaagtttgtattacatttgtattcaaatgcgggatatagagtagttcaaatgcttt |
830 |
Q |
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| T |
35868143 |
tactgtatttctttacttaaagtttgtattacatttgtattcaaatgcgggatatagagtagttcaaatgcttt |
35868216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Original strand, 35867394 - 35867775
Alignment:
| Q |
8 |
gatcgatgactaacctgaaagttttgtttaggaaatggacccccctggaaatcttctctgtgaactgcggccctatcaaaaacaggctcttcattggatg |
107 |
Q |
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| T |
35867394 |
gatcgatgactaacctgaaagttttgtttaggaaatggacccccctggaaatcttctctgtgaactgcgaccctatcaaaaacaggctcttcattggatg |
35867493 |
T |
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| Q |
108 |
gttcagatggagaagggacgggcaagggatgagactgcaacaacccttcatccatgttgggaggcatatcgcctggctgacaagtatgtgcctgtggtta |
207 |
Q |
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| T |
35867494 |
gttcagatggagaagggacgggcaagggatgagactgcaacaacccttcatccatgttgggaggcatatcgcctggctgacaagtatgtacctgtggtta |
35867593 |
T |
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| Q |
208 |
tttgacacacacagtnnnnnnnnnccaatgaatggttctgatcaagtagttgtgcttgtaccttttaggagggagcttgttgtttatttgaatgcatttt |
307 |
Q |
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| T |
35867594 |
tttgacacacacagtaaaaaaaaaccaatgaatggttctgatcaagtagttgtgcttgtaccttttaggagggagcttgttgtttatttgaatgcatttt |
35867693 |
T |
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| Q |
308 |
ctggtgaagccacaacagaatttcctagcacccttcaaatggccagaggaggggtatgttttttaacttgctaacccggaaa |
389 |
Q |
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| T |
35867694 |
ctggtgaagccacaacagaatttcctagcacccttcaaatggccagaggaggggtatgttttttaacttgctaacccggaaa |
35867775 |
T |
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