View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1963-Insertion-5 (Length: 847)

Name: NF1963-Insertion-5
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1963-Insertion-5
NF1963-Insertion-5
[»] chr3 (7 HSPs)
chr3 (196-703)||(35058405-35058910)
chr3 (7-186)||(35058183-35058362)
chr3 (77-189)||(3845193-3845304)
chr3 (805-847)||(35059011-35059053)
chr3 (238-304)||(14022065-14022131)
chr3 (254-306)||(5407008-5407060)
chr3 (77-174)||(38022330-38022424)
[»] chr4 (7 HSPs)
chr4 (77-186)||(2635056-2635164)
chr4 (242-306)||(48045677-48045741)
chr4 (77-131)||(33843584-33843637)
chr4 (236-306)||(33843801-33843871)
chr4 (72-151)||(29904120-29904198)
chr4 (6-47)||(1616522-1616563)
chr4 (141-186)||(33560655-33560700)
[»] chr5 (5 HSPs)
chr5 (238-304)||(18637375-18637441)
chr5 (73-113)||(2090182-2090222)
chr5 (240-306)||(34250279-34250345)
chr5 (88-186)||(10898626-10898723)
chr5 (141-186)||(29922582-29922627)
[»] chr7 (6 HSPs)
chr7 (85-186)||(27571763-27571863)
chr7 (238-304)||(45557457-45557523)
chr7 (238-306)||(33853409-33853477)
chr7 (241-288)||(12306818-12306865)
chr7 (141-179)||(12306933-12306971)
chr7 (236-302)||(15050383-15050449)
[»] chr2 (4 HSPs)
chr2 (79-172)||(33047650-33047742)
chr2 (6-58)||(12850726-12850778)
chr2 (18-72)||(22536146-22536200)
chr2 (238-300)||(30503299-30503361)
[»] scaffold0168 (1 HSPs)
scaffold0168 (77-179)||(31719-31820)
[»] chr6 (8 HSPs)
chr6 (77-178)||(1485238-1485339)
chr6 (237-304)||(34911034-34911100)
chr6 (254-306)||(19601377-19601429)
chr6 (238-306)||(28466909-28466977)
chr6 (238-306)||(34736756-34736824)
chr6 (114-179)||(579126-579191)
chr6 (6-55)||(16540240-16540289)
chr6 (254-299)||(34026417-34026462)
[»] chr8 (1 HSPs)
chr8 (238-306)||(2778605-2778673)
[»] chr1 (3 HSPs)
chr1 (263-307)||(28287257-28287301)
chr1 (114-175)||(24587838-24587899)
chr1 (6-67)||(40352492-40352553)


Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 196 - 703
Target Start/End: Original strand, 35058405 - 35058910
Alignment:
Q  196 ttgattttaacactcaaatattattgttcagctcgctttttatatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactca 295  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35058405 ttgattttaacactcaaatattattgttcaactcactttt-atatccaaacataaagcactttatcttcaactcacttttagttagaatcaatccactca 35058503  T
Q  296 aaatcaattttgtggatgtagaaccatacataaacttattgttcaattcactcactagtgcttatattagataaattcaaataattcaaattaaacaagc 395  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058504 aaatcaattttgtggatgt-gaaccatacatacacttattgttcaattcactcactagtgcttatattagataaattcaaataattcaaattaaacaagc 35058602  T
Q  396 tacaattttagtcaaaataaaacatgtttctatgtatattgatgagttttgaaatttgtttttgtgcagtgtaaaaagttgtgctgttggaagaaatggc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  35058603 tacaattttagtcaaaataaaacatgtttctatgtatattgatgagttttgaaatttgtttttgtgtagtgtaaaaagttgtgctgttggaagagatggc 35058702  T
Q  496 gtcaggcatttgatactgtgcagggttattttgggaagaactgagattgtgcaagctgacacaaaacaatgttatccaagttgtgcggattatgattctg 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058703 gtcaggcatttgatactgtgcagggttattttgggaagaactgagattgtgcaagctgacacaaaacaatgttatccaagttgtgcggattatgattctg 35058802  T
Q  596 gggttgatagtttttcagctccaactaagtacatgatttggagtagtagaatgaatactcatgtttggcctgcatatgttttaagcttcaaggtttcttc 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35058803 gggttgatagtttttcagctccaactaagtacatgatttggagtagtagaatgaatactcatgtttggcctgcatatgttttaagcttcaaggtttcttc 35058902  T
Q  696 tttgaaag 703  Q
    ||||||||    
T  35058903 tttgaaag 35058910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 35058183 - 35058362
Alignment:
Q  7 aaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacactgccaaacatacgcttaatgtatgtttggtttcacttctggagggacc 106  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35058183 aaaatcaattctacaaaatcaattctatcaaaattaattctccacaccgcacggccaaacatacgcttaatgtatgtttggtttcacttctggagggacc 35058282  T
Q  107 aaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35058283 aaaattggattctagagatgtagaactgtttctcacatgtttgatggctctcgagtagaattgattttgcctcaagaatt 35058362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 3845304 - 3845193
Alignment:
Q  77 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 176  Q
    ||||||||||||| ||||| |||||  |||||||||| ||||||||| ||||||| || || | ||||||||| | | |||  ||||||||||||| |||    
T  3845304 tgtatgtttggttccacttttggagtaaccaaaattg-attctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgattctgc 3845206  T
Q  177 ctcaagaatttat 189  Q
    ||| |||||||||    
T  3845205 ctctagaatttat 3845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 805 - 847
Target Start/End: Original strand, 35059011 - 35059053
Alignment:
Q  805 gtagcagttgagattgaaggatatgggagaccaacttcacctt 847  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  35059011 gtagcggttgagattgaaggatatgggagaccaacttcacctt 35059053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 14022065 - 14022131
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 304  Q
    |||||||||| |||  ||||||||  |||||||||||||| |||||| ||| |||||||||||||||    
T  14022065 tatccaaacacaaattactttatctgcaactcacttttagatagaataaattcactcaaaatcaatt 14022131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 5407008 - 5407060
Alignment:
Q  254 actttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||| | |||||||| |||||| |||||||||| |||||||||||||||||    
T  5407008 actttaccttcaactcaattttagctagaatcaattcactcaaaatcaatttt 5407060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 38022330 - 38022424
Alignment:
Q  77 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgatttt 174  Q
    ||||||||||||||||||||| || |||||||| || |||||||||  ||||||| || || |  |||||||||| ||||   |||||||||||||||    
T  38022330 tgtatgtttggtttcacttctagaaggaccaaagtt-gattctagaagtgtagaattgattttggcatgtttgattgctc--aagtagaattgatttt 38022424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 2635056 - 2635164
Alignment:
Q  77 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 176  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||  |||| || || || | ||||||||||| ||| || ||||||| |||||||||    
T  2635056 tgtatgtttggtttcacttttagagggaccaaaatt-gattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgc 2635154  T
Q  177 ctcaagaatt 186  Q
    ||| ||||||    
T  2635155 ctccagaatt 2635164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 48045741 - 48045677
Alignment:
Q  242 caaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||||| ||||||||| |||||||| ||||||  |||||||||  ||||||||||||||||    
T  48045741 caaacataaatcactttatcttcaactcagttttagccagaatcaatttactcaaaatcaatttt 48045677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 33843584 - 33843637
Alignment:
Q  77 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaa 131  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||    
T  33843584 tgtatgtttggtttcacttctagagggtccaaaatt-gattctagaggtgtagaa 33843637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 33843801 - 33843871
Alignment:
Q  236 tatatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||||||||||| |||||||    ||||||||||||||  ||||||||| || ||||||||||||||    
T  33843801 tatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaatttt 33843871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 29904120 - 29904198
Alignment:
Q  72 cttaatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgat 151  Q
    |||| ||||||||||||||||||||| ||||  ||| |||| |||||||||||| || || || |||| |||||||||||    
T  29904120 cttagtgtatgtttggtttcacttctagaggatccacaatt-gattctagagatataaaattgattctaacatgtttgat 29904198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 1616522 - 1616563
Alignment:
Q  6 caaaatcaattctacaaaatcaattctaacaaatttaattct 47  Q
    |||||||||||||||||||||||||||| |||| | ||||||    
T  1616522 caaaatcaattctacaaaatcaattctatcaaaatcaattct 1616563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 33560700 - 33560655
Alignment:
Q  141 acatgtttgatggctcttgagtagaattgattttgcctcaagaatt 186  Q
    ||||||||| | ||||| ||||||||||||||||||||| ||||||    
T  33560700 acatgtttggttgctctcgagtagaattgattttgcctctagaatt 33560655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 18637375 - 18637441
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 304  Q
    |||||||||| ||| |||| ||  ||||||||||||||||||||||||||| |||||||||||||||    
T  18637375 tatccaaacacaaatcactgtactctcaactcacttttagttagaatcaattcactcaaaatcaatt 18637441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 2090222 - 2090182
Alignment:
Q  73 ttaatgtatgtttggtttcacttctggagggaccaaaattg 113  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2090222 ttaatgtttgtttggtttcacttctggagggaccaaaattg 2090182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 34250345 - 34250279
Alignment:
Q  240 tccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||||||| ||||||| | |||||||| || |||| | ||||||| |||||||||||||||||    
T  34250345 tccaaacataaatcactttagcttcaactcaattatagtcaaaatcaattcactcaaaatcaatttt 34250279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 10898626 - 10898723
Alignment:
Q  88 tttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 186  Q
    |||||||| |||||| | |||||||| ||||||||| ||| ||| |  || | ||||||||| | ||||| ||||| ||||||||||||||| ||||||    
T  10898626 tttcacttttggaggaatcaaaattg-attctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaatt 10898723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 29922582 - 29922627
Alignment:
Q  141 acatgtttgatggctcttgagtagaattgattttgcctcaagaatt 186  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaatt 29922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 27571763 - 27571863
Alignment:
Q  85 tggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaa 184  Q
    ||||||||||||| ||||||||||| ||| |||| |||| ||||||| ||  ||  ||||||||||| ||||| ||||| |||||||||| |||||||||    
T  27571763 tggtttcacttctagagggaccaaatttg-attcaagaggtgtagaattgactcctacatgtttgattgctctcgagtataattgattttacctcaagaa 27571861  T
Q  185 tt 186  Q
    ||    
T  27571862 tt 27571863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 45557457 - 45557523
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 304  Q
    |||||||||| ||| ||||||| | |||||||||||||||| ||||||||| || ||||||||||||    
T  45557457 tatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaatcaatt 45557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 33853477 - 33853409
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||||||||| ||||||| | |||||||||| ||||  ||||||||| |||| ||||||||||||    
T  33853477 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 33853409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 12306818 - 12306865
Alignment:
Q  241 ccaaacataaagcactttatcctcaactcacttttagttagaatcaat 288  Q
    ||||||||||| ||||||||| |||||||||||||||  |||||||||    
T  12306818 ccaaacataaatcactttatcttcaactcacttttagccagaatcaat 12306865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 12306933 - 12306971
Alignment:
Q  141 acatgtttgatggctcttgagtagaattgattttgcctc 179  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  12306933 acatgtttggttgctcttgagtagaattgattttgcctc 12306971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 15050383 - 15050449
Alignment:
Q  236 tatatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaa 302  Q
    ||||||||||||||||  |||||| ||| || ||| |||||| ||||||||||  ||||||||||||    
T  15050383 tatatccaaacataaattactttaccctaaattcatttttagctagaatcaattaactcaaaatcaa 15050449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 172
Target Start/End: Complemental strand, 33047742 - 33047650
Alignment:
Q  79 tatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgatt 172  Q
    ||||||||||||| ||||| |||||||||||||| |||| | ||| ||||||| || |||||||||||||||| |||   ||||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaatt-gattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatt 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 12850726 - 12850778
Alignment:
Q  6 caaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacac 58  Q
    |||||||||||||||| |||||||||||  ||| | |||||||||||||||||    
T  12850726 caaaatcaattctacataatcaattctattaaaatcaattctccacaccacac 12850778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 22536146 - 22536200
Alignment:
Q  18 tacaaaatcaattctaacaaatttaattctccacaccacactgccaaacatacgc 72  Q
    |||| ||||||||||| |||| | |||||||||||||||||  ||||||||||||    
T  22536146 tacataatcaattctatcaaaatcaattctccacaccacacacccaaacatacgc 22536200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 30503299 - 30503361
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatc 300  Q
    |||||||||| ||| || |||| | |||||| ||||||||| ||||||||| |||||||||||    
T  30503299 tatccaaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaatc 30503361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 31719 - 31820
Alignment:
Q  77 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 176  Q
    ||||||||||||| ||||||| ||| |||||||||| |||||||||| ||||||| || |||| ||||||||| | | | | ||||| |||||||| |||    
T  31719 tgtatgtttggttccacttctagagtgaccaaaatt-gattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgc 31817  T
Q  177 ctc 179  Q
    |||    
T  31818 ctc 31820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 1485339 - 1485238
Alignment:
Q  77 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctc-acatgtttgatggctcttgagtagaattgattttg 175  Q
    ||||| ||||||||||||||| |||||  ||| || ||||||||||| ||||||| || ||||  ||||||||| | |||||||||||||||| ||||||    
T  1485339 tgtatatttggtttcacttctagaggggtcaatat-ggattctagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttg 1485241  T
Q  176 cct 178  Q
    |||    
T  1485240 cct 1485238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 34911034 - 34911100
Alignment:
Q  237 atatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 304  Q
    ||||||||||||||| ||||| | | ||||||||||||||||  |||||||| |||||||||||||||    
T  34911034 atatccaaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaatcaatt 34911100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 19601429 - 19601377
Alignment:
Q  254 actttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||| |||||||||| ||||||| ||||||| || ||||||||||||||    
T  19601429 actttatcttcaactcactattagttaaaatcaattcaatcaaaatcaatttt 19601377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 28466977 - 28466909
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||||||||| |||| || | |||||||| ||||||  ||||||||| |||||||||||| ||||    
T  28466977 tatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatcattttt 28466909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 34736756 - 34736824
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||||||||| |||| || | |||||||| ||||||  ||||||||| |||||||||||| ||||    
T  34736756 tatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatcattttt 34736824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 579191 - 579126
Alignment:
Q  114 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctc 179  Q
    ||||||||||||||| ||||| || | ||||| ||||| ||||| |||||||| ||| ||||||||    
T  579191 gattctagagatgtaaaactgattttgacatgattgattgctctcgagtagaactgactttgcctc 579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 16540240 - 16540289
Alignment:
Q  6 caaaatcaattctacaaaatcaattctaacaaatttaattctccacacca 55  Q
    |||||||||||||||| ||||||||||| |||| | |||||||| |||||    
T  16540240 caaaatcaattctacataatcaattctatcaaaatcaattctccccacca 16540289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 34026462 - 34026417
Alignment:
Q  254 actttatcctcaactcacttttagttagaatcaatccactcaaaat 299  Q
    |||||||| |||||||||||||||  ||||||||| ||||||||||    
T  34026462 actttatcttcaactcacttttagccagaatcaattcactcaaaat 34026417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 2778605 - 2778673
Alignment:
Q  238 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 306  Q
    |||||||| ||||| ||||||||| ||||||||||||||| |||||||| | |||  ||||||||||||    
T  2778605 tatccaaaaataaatcactttatcttcaactcacttttagctagaatcagttcacataaaatcaatttt 2778673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 28287301 - 28287257
Alignment:
Q  263 tcaactcacttttagttagaatcaatccactcaaaatcaattttg 307  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||    
T  28287301 tcaactcacttttagctagaatcaattcactcaaagtcaattttg 28287257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 24587838 - 24587899
Alignment:
Q  114 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttg 175  Q
    |||||||||| ||||||| || || | ||||||||| | |||||||||||||||||| ||||    
T  24587838 gattctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattgactttg 24587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 40352492 - 40352553
Alignment:
Q  6 caaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacactgccaaaca 67  Q
    |||||||||||| ||||||||||||||| |||| | |||||||| |||| |||  |||||||    
T  40352492 caaaatcaattccacaaaatcaattctatcaaaatcaattctcctcaccgcacaaccaaaca 40352553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University