View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1963-Insertion-6 (Length: 834)
Name: NF1963-Insertion-6
Description: NF1963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1963-Insertion-6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Complemental strand, 29238526 - 29237999
Alignment:
| Q |
8 |
gtggcgttgtcgatggtttacagaagatgtctatttgcagcaataatgatagtgttgtcsacggtgttcataatttgactttgtggtgaaaaaaggtaca |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29238526 |
gtggcgttgtcgatagtttacagaagatgtctatttgcagcaataatgatagtgttgtcgacggtgttcataatttgactttgtggtgaaaaaaggtaca |
29238427 |
T |
|
| Q |
108 |
aggattaacaaattaaattggtctttcttagttaacggatatatatattaatgtttgttagattgagaagaaaaaatggataacactgttttgttatatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
29238426 |
aggattaacaaattaaattggtctttcttagttaacggatatatat--taatgtttgttagattgagaagaaaaaatagataacactgttttgttatagt |
29238329 |
T |
|
| Q |
208 |
atatctgatagtgtacaaggaaatgtatggtttagaccctatatcgtctagaaattcatatcattgaaaatctttggatacagtttttgattttaaacat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
29238328 |
atatctgatagtgtacaaggaaatgtat--tctagaccctatatcgtctagaaattcatatcattgaaaatctttggatatagtttt-gattttaaacat |
29238232 |
T |
|
| Q |
308 |
tcattttatcttcattgttgcaactcatgcattaatcataaactagaatataggtttgatgattgtgatgtgttcttgggatattctcccaatgataaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29238231 |
tcattttatcttcattgttgcaactcatgcattaatcataaactggaatataggtttgatgattgtgatgtgttcttgggatattctcccaatcataaag |
29238132 |
T |
|
| Q |
408 |
gttacaagtgtcttgccttcaatggccatgttaatacaggcaaatatgttatggttgatgagtataaatttccagatccatttttgtttcatacttcttg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29238131 |
gttacaagtgtcttgccttcaatggccatgttaatacaggcaaatatgttatggttgatgagtataaatttccagatccatttttgtttcatacttcttg |
29238032 |
T |
|
| Q |
508 |
cagccactttgtcttattgttccttaagcatac |
540 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |
|
|
| T |
29238031 |
cagccactttgtcttattattctttaagcatac |
29237999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 666 - 834
Target Start/End: Complemental strand, 29237879 - 29237710
Alignment:
| Q |
666 |
aaaagtaacgttaggagataacactgtagattgattatataaacactgtggtctgtgggg-aactagttgctacattatggaatgatctgaatagattga |
764 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29237879 |
aaaagtaacgttaggggataacgctgtaggttgattatgtaaaaactgtggtctgtgggggaactagttgctacattagggaatgatctgaatagattga |
29237780 |
T |
|
| Q |
765 |
ctattggaacacttgagataacactgtaggttgatttttgtacattttattttggatgaactgaaggttg |
834 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
29237779 |
ctattggaacacttgagataacactgtaggttgatttttgcacattttattttggatgaactgaacgttg |
29237710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 555 - 667
Target Start/End: Complemental strand, 29238026 - 29237914
Alignment:
| Q |
555 |
actttgtcttattattctttaagcatactgcatacatgcattgtcctacaaaatcaaattccttccaaatctcaatccaaaactcgacgtagcggattga |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
29238026 |
actttgtcttattattctttaagcatactgcatacatgcattgtcctacaaaatcaaattccttccaaatctcaatccaaaactggacatagcggattga |
29237927 |
T |
|
| Q |
655 |
gagtttgtcttaa |
667 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29237926 |
gagtttgtcttaa |
29237914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University