View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_high_1 (Length: 580)
Name: NF19630_high_1
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Original strand, 40009237 - 40009759
Alignment:
| Q |
13 |
aatatctactccaactactgcaacgtaaattagtaattggtttcttgtatagattcttcatcctcatttttctcaagctctactctatatgttcaaaata |
112 |
Q |
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| T |
40009237 |
aatatctactccaactactgcaacgtaaattagtaattggtttcttgtatagattcttcatcctcatttttctcaagctctactctatatgttcaaaata |
40009336 |
T |
|
| Q |
113 |
atgatgaaaattgtaagtaatgaatgtaagcaaagctatatgtgtagcgtatacttgattgaaaaatgaaataatcattagaagacacactcacctggaa |
212 |
Q |
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| T |
40009337 |
atgatgaaaattgtaagtaatgaatgtaagcaaagctatatgtgtagcgtatacttgattgaaaaatgaaataatcattagaagacacactcacctggaa |
40009436 |
T |
|
| Q |
213 |
ctatataggagagaatgaatgagttggtggggtagtcaactatggttgcaatttggattgcggattgatctgccctcgggtttgatgacattcactttgt |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40009437 |
ctatattggagagaatgaatgagttggtggggtagtcaactatggttgcaatttggattgcggattgatctgccctcgggtttgatgacattcactttgt |
40009536 |
T |
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| Q |
313 |
aatgaaataaaagtaatgtccttatgaagggaccctttcgtcttttactactatcgaatctgctgaactttccttagactcactcagttgcacatttttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40009537 |
aatgaaataaaagtaatgtccttatgaagggaccctttcgtcttttactactatcgaatctgctgaactttccttagactcacttagttgcacatttttg |
40009636 |
T |
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| Q |
413 |
agggcatgagagcaatattcgtgtccgtgggtatttactcctttgattgagttttggtataagtttgagctttctttgattttaaaacacggattcgaga |
512 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| |
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| T |
40009637 |
agggcatgagcgcaatattcgtgtccgtgggtatttactactttgattgagttttggtataagtttgagctttctctgattttaaaacactgatacaaga |
40009736 |
T |
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| Q |
513 |
tgcataactgagatatagatatt |
535 |
Q |
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| T |
40009737 |
tgcataactgagatatagatatt |
40009759 |
T |
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