View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_high_18 (Length: 363)
Name: NF19630_high_18
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 1802381 - 1802724
Alignment:
| Q |
1 |
catttttcctttaacaaatatttagccacaattatcaaccctacatatattgtcagccaggaattttatgtcagattacatgtcataaactacgtcaatt |
100 |
Q |
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| T |
1802381 |
catttttcctttaacaa-tatttagccacaattatcaaccctacatatattgtcagccaggaattttatgtcagattacatgtcataaactacgtcaatt |
1802479 |
T |
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| Q |
101 |
ctatttcttggaaatgtttgatctacctgatttggatannnnnnnnnnnnggctgacttagggaaatattcaatgtttaactgctactgatctagacaaa |
200 |
Q |
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| T |
1802480 |
ctatttcttggaaatgtttgatctacctgatttggatattttttttttt-ggctgacttagggaaatattcaatgtttaactgctactgatctagacaaa |
1802578 |
T |
|
| Q |
201 |
tatggtgccgatgcatggctcctttcccctccctgtcaaccttacacgcgacaaggtgaatcttcttcttctattataactgatttatttcgttctgtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
1802579 |
tatggtgccgatgcatggctcctttcccctccctgccaaccttacacgcgacaaggtgaattttcttcttctattataactgatttatttcattctgtaa |
1802678 |
T |
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| Q |
301 |
gaaaaatgttgctcaataattttgtgttaggtcttcagaaggacac |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1802679 |
gaaaaatgttgctcaataattttgtgttaggtcttcagaaggacac |
1802724 |
T |
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