View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_high_20 (Length: 290)
Name: NF19630_high_20
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 33102699 - 33102434
Alignment:
| Q |
10 |
acatcatcagcaccaaaattagaatgtctcggagcatagcccatcatagagtagaaatccgtatgattaaaattagaccctcgcggcgtcggattccggg |
109 |
Q |
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| T |
33102699 |
acatcattagcaccaaaattagaatgtctcggagcatagcccatcatagagtagaaatccgtatgattaaaattagaccctcgcggcgtcggattccggg |
33102600 |
T |
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| Q |
110 |
aagaactcaaactataaatctctgctccggtgagattcgacggccgcggagtcatcataaaagatctccgggaagcgtttgattttctgacatgaacatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102599 |
aagaactcaaactataaatctctgctccggtgagattcgacggccgtggagtcatcataaaagatctccgggaagcgtttgattttctgacatgaacatg |
33102500 |
T |
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| Q |
210 |
aagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaac |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102499 |
aagcttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaac |
33102434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 263
Target Start/End: Original strand, 10838490 - 10838636
Alignment:
| Q |
120 |
actataaatctctgctccggtgagattcgacggccgcggag---tcatcataaaagatctccgggaagcgtttgattttctgacatgaacatgaagctta |
216 |
Q |
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|||||||||||| ||||| || | ||| ||||| ||||||| |||||||||| || ||||| || ||||| || || || ||| |||||| | ||| |
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| T |
10838490 |
actataaatctcagctccagtcaaatttgacggtcgcggagtattcatcataaatgacctccgcgacgcgttagacttcctaacagtaacatgtaacttc |
10838589 |
T |
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| Q |
217 |
ccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatc |
263 |
Q |
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| T |
10838590 |
ccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatc |
10838636 |
T |
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