View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19630_high_22 (Length: 265)
Name: NF19630_high_22
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 34752529 - 34752294
Alignment:
| Q |
14 |
atataagaaaaatttaaggaaaagaaactagggtatatatatcttgtttatatattttcgtgaaaagagagataattgatactagaatgattttctactt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34752529 |
atataagaaaaatttaaggaaaagaaactagggtatatatatcttgtttatatattttcgtgaaaagagatataattgatactagaatgattttctactt |
34752430 |
T |
|
| Q |
114 |
tggtcaagaattcaatcataattgagcggtggtgnnnnnnncctcgtttcttttcacaacctttaattcaatggctatgcaaggagatcatgattcaatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34752429 |
tggtcaagaattcaatcataattgagcggtggtgtttttttcctcgtttcttttcacaacctttaattcaatggctatgcaaggagatcatgattcaatt |
34752330 |
T |
|
| Q |
214 |
tcaaagatccagatttaataaatgtgtggatgtagt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34752329 |
tcaaagatccagatttaataaatgtgtggatgtagt |
34752294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University