View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_high_27 (Length: 237)
Name: NF19630_high_27
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9731148 - 9730919
Alignment:
| Q |
1 |
ttatcatataagtgcttatgtataagttattaatatatgatgttttcataaggtaaaagtagcttctggaagtgtcataagctgcttccgaacagtctct |
100 |
Q |
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| T |
9731148 |
ttatcatataagtgcttatgtataagttattaatatatgatgttttcataaggtaaaagtagcttctggaagtgtcataagctgctaccaaacagtctct |
9731049 |
T |
|
| Q |
101 |
taagtgtttatgtgcagttaagttcaaatgaggcaatctaaacaggccattattgtgttgtaaattgatatttattactgtctgattatttgatcagatt |
200 |
Q |
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| T |
9731048 |
taagtgtttatgtgcagttaagttcaaatgaggcaatctaaacaggccattattgtcttgtaaattgatatttattactgtctgattatttgatcagatt |
9730949 |
T |
|
| Q |
201 |
ttctggcactattgttggggttgatgatgt |
230 |
Q |
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| T |
9730948 |
ttctggcactattgttggggttggtgatgt |
9730919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35220847 - 35220811
Alignment:
| Q |
1 |
ttatcatataagtgcttatgtataagttattaatata |
37 |
Q |
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| T |
35220847 |
ttatcatataagtgcttatgtataagttattaatata |
35220811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 35809857 - 35809887
Alignment:
| Q |
1 |
ttatcatataagtgcttatgtataagttatt |
31 |
Q |
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| T |
35809857 |
ttatcatataagtgcttatgtataagttatt |
35809887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51556013 - 51555977
Alignment:
| Q |
1 |
ttatcatataagtgcttatgtataagttattaatata |
37 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
51556013 |
ttatcatataagtgcttatgtataagctattattata |
51555977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39971243 - 39971271
Alignment:
| Q |
1 |
ttatcatataagtgcttatgtataagtta |
29 |
Q |
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|
| T |
39971243 |
ttatcatataagtgcttatgtataagtta |
39971271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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