View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19630_high_29 (Length: 227)
Name: NF19630_high_29
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_29 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 36161302 - 36161208
Alignment:
| Q |
133 |
atgtacaaggagttgattttgtgactgtaatgctttaaatcagtaccatacctttgttattggcctcaaacaaaggcttatgattatgattcatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36161302 |
atgtacaaggagttgattttgtgactgtaatgctttaaatcagtaccatacctttgttattggcctcaaacaaaggcttatgattatgattcatt |
36161208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36161434 - 36161358
Alignment:
| Q |
1 |
tcagctcttgtagtaccatcaacccctttctctgaaacatgttttgattgatttattacattatttgtatatgaatg |
77 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36161434 |
tcagctcttgtagcaccatcaacccctttctctgaaacatgttttgattgattaattacattatttgtatatgaatg |
36161358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University