View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_high_6 (Length: 492)
Name: NF19630_high_6
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 30033698 - 30034176
Alignment:
| Q |
1 |
aattctttactggtataataattatgcatgttttacgttgaataaataactatgcatgttgagcttgtttgctttcgcatttgatcttgttaaatatatt |
100 |
Q |
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| T |
30033698 |
aattctttactggtataataattatgcatgttttacgttgaataaataactatgcatgttgagcttgtttgctttcgcatttgatcttgttaaatatatt |
30033797 |
T |
|
| Q |
101 |
aacgtgttttgggtgacaaatcacacgttacaaaatcttttgagtgatccttatggaagaaactgctgtggagatgaagaaaaaacgtgtttgtttgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30033798 |
aacgtgttttgggtgacaaatcacacgttacaaaatcttttgagtgatccttatggaagaaactgctgtggagatgaagaaaaaacgtgtttgtttgtgg |
30033897 |
T |
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| Q |
201 |
tg---agtggcgttggcatggtctacttcaacttcaagcaaccaaagtagtataatactacgtatgtgctgtgtctttcttatgtgttaa---tgttaat |
294 |
Q |
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| T |
30033898 |
tgagtagtggcgttggcatgacctacttcaacttcaagcaaccaaagtagtataatactacgtatgtgc--tgtctttcttatgtgttaatattgttaat |
30033995 |
T |
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| Q |
295 |
cagaatctggaaaatgatatcagtttttgttaccacgcatgtgcatgccagcagttgtctcaaatctcaatcttccaagctctctaaacaagtttatgtt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30033996 |
cagaatctggaaaatgatatcagtttttgttaccacgcatgtgcatgccagcagttgtctcaaatctcaatcttccaagctctctaaacaagtttatgtt |
30034095 |
T |
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| Q |
395 |
ttgagttttgacggtggaaatatttctaaaaaacagaaaacgacactggaaatatgtttggttgaatttctaaatacattt |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30034096 |
ttgagttttgacggtggaaatatttctaaaaaacagaaaaccacactggaaatatgtttggttgaatttctaaatacattt |
30034176 |
T |
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