View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19630_high_8 (Length: 456)

Name: NF19630_high_8
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19630_high_8
NF19630_high_8
[»] chr3 (2 HSPs)
chr3 (18-376)||(34539560-34539930)
chr3 (393-456)||(1235999-1236062)
[»] chr8 (1 HSPs)
chr8 (388-456)||(37080942-37081010)
[»] chr7 (1 HSPs)
chr7 (399-456)||(7805757-7805814)
[»] chr5 (2 HSPs)
chr5 (388-456)||(27983762-27983830)
chr5 (392-434)||(41968858-41968900)
[»] chr1 (2 HSPs)
chr1 (393-450)||(32953477-32953534)
chr1 (400-456)||(3722642-3722698)
[»] chr2 (1 HSPs)
chr2 (388-456)||(36033552-36033619)
[»] scaffold0011 (1 HSPs)
scaffold0011 (393-450)||(229018-229075)
[»] chr6 (1 HSPs)
chr6 (392-456)||(29521888-29521952)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 34539930 - 34539560
Alignment:
Q  18 atatgttgtgatcacaacttactgatgattatatgttcctgaaaaatattgtatctttacatatattatgcatttatataaaatgatagtcgaacatgag 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34539930 atatgttgtgaccacaacttactgatgattatatgttcctgaaaaacattgtatctttacatatattatgcatttatataaaatgatagtcgaacatgag 34539831  T
Q  118 tgag----------atgagatgatttacctatgcgcatatcttgataattttaggatttgtcattatttgcagcataattcttttgcatggaccccctgg 207  Q
    ||||          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34539830 tgagcatgagtgagatgagatgatttacctattcgcatatcttgataattttaggatttgtcattatttgcagcataattcttttgcatggaccccctgg 34539731  T
Q  208 gactggaaagacgtctttatgtaaagcattagctcagaaactgtcaattcgattcaattcaaggtgaattgatctattatttatactcttaatcatattt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34539730 gactggaaagacgtctttatgtaaagcattagctcagaaactgtcaattcgattcaattcaaggtaaattgatctattatttatactcttaatcatattt 34539631  T
Q  308 atcattg--aacaagtaaatgaagggagtacaaatttacctaccattttttcccactcagattcccacagg 376  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34539630 atcattgaaaacaagtaaatgaagggagtacaaatttacctaccattttttcccactcagattcccacagg 34539560  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 1235999 - 1236062
Alignment:
Q  393 actctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    |||||||||||||| |||||||| || |||||||||||||| || ||||||||||||| |||||    
T  1235999 actctcttaatttttgtgttgttatgtaagtgtgtaacatatataaaatgagattttagagaga 1236062  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 37081010 - 37080942
Alignment:
Q  388 cactgactctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37081010 cactcactctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 37080942  T

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Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 399 - 456
Target Start/End: Complemental strand, 7805814 - 7805757
Alignment:
Q  399 ttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7805814 ttaattttggtgttgttgtgcaagtgtgtgacatagatgaaatgagattttaaagaga 7805757  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 27983830 - 27983762
Alignment:
Q  388 cactgactctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||    
T  27983830 cactcactctcttaattttggtgttgttgtataagtgtgtaacatagatgaaatgagattttagagaga 27983762  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Original strand, 41968858 - 41968900
Alignment:
Q  392 gactctcttaattttggtgttgttgtgcaagtgtgtaacatag 434  Q
    |||||||||||||||||||||||| || |||| ||||||||||    
T  41968858 gactctcttaattttggtgttgttatgtaagtatgtaacatag 41968900  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 32953477 - 32953534
Alignment:
Q  393 actctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagatttta 450  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  32953477 actctcttaattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagatttta 32953534  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 400 - 456
Target Start/End: Complemental strand, 3722698 - 3722642
Alignment:
Q  400 taattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||    
T  3722698 taattttggtgttgttatgtaagtgtgtaacatagataaaatgagattttagagaga 3722642  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 36033552 - 36033619
Alignment:
Q  388 cactgactctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||    
T  36033552 cactcactctcttaattttggtgttgttgtgtaagtgtgtaacatagatg-aatgagattttagagaga 36033619  T

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Target: scaffold0011 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 229075 - 229018
Alignment:
Q  393 actctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagatttta 450  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  229075 actctcttaattttggcattgttgtgtaagtgtgtaacatagatgaaatgagatttta 229018  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 29521952 - 29521888
Alignment:
Q  392 gactctcttaattttggtgttgttgtgcaagtgtgtaacatagatgaaatgagattttaaagaga 456  Q
    |||||| ||||||||| |||| || || | |||||||| |||||| ||||||||||||| |||||    
T  29521952 gactcttttaattttgatgtttttatgtatgtgtgtaaaatagataaaatgagattttagagaga 29521888  T

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