View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_high_9 (Length: 443)
Name: NF19630_high_9
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 47645498 - 47645086
Alignment:
| Q |
15 |
gtttcataaggataaaccccttcaggaaaaccaatatctttaagaaaatcaaccatatcatgtgctgaatagtttctatatggagtagtaactaaagatt |
114 |
Q |
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| T |
47645498 |
gtttcataaggataaaccccttcaggaaaaccaatatctttaagaaaatcaatcatatcatgtgctgagtagtttctatatggagtagtaactaaagatt |
47645399 |
T |
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| Q |
115 |
tatcaatatcaaacatcttaggatttggcaaaagccataggttactctcagaagttctctgttcatttcttactatcaaagggtttactaatggcacccc |
214 |
Q |
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| T |
47645398 |
tatcaatatcaaacatcttaggatttggcaaaagccataggttactctcagaagttctctgttcatttcttactatcaaagggtttactaatggcacccc |
47645299 |
T |
|
| Q |
215 |
caaagtattgcctgatgcaaaagtgaacatttcatcaacagttccaccccatggagcagaaagtgctataaaatatttaatgaatttcttgcgccaagaa |
314 |
Q |
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| T |
47645298 |
caaagtattgcctgatgcaaaagtgaacatttcatcaacagttccaccccatggagcagaaagtgctataaaatgtttaatgaatttcttgcgccaagaa |
47645199 |
T |
|
| Q |
315 |
gaggggtttcgattaaggagttcgaggacaaataaacctcccaagctgtgcgagacaagtatcaccggcttccctccattggaattgcttgctttttcta |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47645198 |
gaggggttccgattaaggagttcgaggacaaataaacctcccaagctgtgtgagacaagtatcaccggcttccctccattggaattgcttgctttttcta |
47645099 |
T |
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| Q |
415 |
tcaaattctttag |
427 |
Q |
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| T |
47645098 |
tcaaattctttag |
47645086 |
T |
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Back To:
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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 321 - 427
Target Start/End: Complemental strand, 31641890 - 31641783
Alignment:
| Q |
321 |
tttcgattaa-ggagttcgaggacaaataaacctcccaagctgtgcgagacaagtatcaccggcttccctccattggaattgcttgctttttctatcaaa |
419 |
Q |
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|||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
31641890 |
tttcgattaaaggagttcaaggacaaataaacctcctaatctgtgtgagacaagtattagtggcttccctccattggaattgcttgctttttctatcaaa |
31641791 |
T |
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| Q |
420 |
ttctttag |
427 |
Q |
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| T |
31641790 |
ttctttag |
31641783 |
T |
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