View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19630_low_11 (Length: 395)

Name: NF19630_low_11
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19630_low_11
NF19630_low_11
[»] chr1 (6 HSPs)
chr1 (262-374)||(23949815-23949927)
chr1 (262-380)||(42677308-42677426)
chr1 (262-376)||(5308759-5308873)
chr1 (262-380)||(23084874-23084992)
chr1 (262-380)||(50952531-50952649)
chr1 (263-376)||(34553840-34553953)
[»] chr8 (3 HSPs)
chr8 (262-380)||(26616690-26616808)
chr8 (262-376)||(1636115-1636229)
chr8 (262-380)||(456324-456442)
[»] chr7 (3 HSPs)
chr7 (262-380)||(48619051-48619169)
chr7 (262-376)||(8019713-8019826)
chr7 (271-376)||(29213696-29213802)
[»] chr3 (3 HSPs)
chr3 (262-380)||(27156131-27156249)
chr3 (262-376)||(54346852-54346966)
chr3 (261-354)||(54812238-54812331)
[»] chr5 (3 HSPs)
chr5 (262-380)||(18259103-18259221)
chr5 (262-380)||(22540327-22540445)
chr5 (263-380)||(34080702-34080819)
[»] chr4 (4 HSPs)
chr4 (262-380)||(36894380-36894498)
chr4 (264-380)||(34389769-34389885)
chr4 (138-189)||(17795821-17795872)
chr4 (82-127)||(17795913-17795958)
[»] chr2 (6 HSPs)
chr2 (262-380)||(7305044-7305162)
chr2 (262-374)||(13187005-13187117)
chr2 (262-380)||(6599036-6599154)
chr2 (262-376)||(40426135-40426249)
chr2 (272-373)||(37307265-37307366)
chr2 (267-380)||(40190383-40190496)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 23949815 - 23949927
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||||||| |||||||| |||||||||||||| || |||    
T  23949815 ggaagctgctgaagatgagttagaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacaga 23949914  T
Q  362 tcactttaatttt 374  Q
    ||| |||||||||    
T  23949915 tcattttaatttt 23949927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 42677308 - 42677426
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||| |||||||| |||||||||||||| || |||    
T  42677308 ggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacaga 42677407  T
Q  362 tcactttaattttctagtg 380  Q
    ||  |||||||||||||||    
T  42677408 tctttttaattttctagtg 42677426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 376
Target Start/End: Original strand, 5308759 - 5308873
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    |||| |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||| |||||||| |||||||||||||| || | |    
T  5308759 ggaatctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacata 5308858  T
Q  362 tcactttaattttct 376  Q
    ||| |||||||||||    
T  5308859 tcattttaattttct 5308873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 23084992 - 23084874
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| |||| |||||| |||||||||| |||||||| |||||||| |||||||||||||| ||   |    
T  23084992 ggaagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacgta 23084893  T
Q  362 tcactttaattttctagtg 380  Q
    ||| |||||||||||||||    
T  23084892 tcattttaattttctagtg 23084874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 50952649 - 50952531
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| ||||| |||||||| |||||||| |||| ||||||||| || |||    
T  50952649 ggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttctacaga 50952550  T
Q  362 tcactttaattttctagtg 380  Q
    ||  |||||||||||||||    
T  50952549 tctttttaattttctagtg 50952531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 376
Target Start/End: Complemental strand, 34553953 - 34553840
Alignment:
Q  263 gaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagagat 362  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||| | ||||||||||  ||||||| ||| |||| |||||||| ||||| || | ||    
T  34553953 gaagatgctgaagatgagttagaatgttcaactcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaatttaaacatttatacatat 34553854  T
Q  363 cactttaattttct 376  Q
    ||||||||||||||    
T  34553853 cactttaattttct 34553840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 26616808 - 26616690
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||||||| ||| |||||||  |||||||||||||| || |||    
T  26616808 ggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttctacaga 26616709  T
Q  362 tcactttaattttctagtg 380  Q
    ||| |||||||||||||||    
T  26616708 tcattttaattttctagtg 26616690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 376
Target Start/End: Original strand, 1636115 - 1636229
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||  ||||||| ||| |||||||||| |||||||| |||||||| |||||||| ||||| || |||    
T  1636115 ggaagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttctacaga 1636214  T
Q  362 tcactttaattttct 376  Q
    ||| |||||||||||    
T  1636215 tcattttaattttct 1636229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 456442 - 456324
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||| ||||||||||||| |||||| |||||||| |||||||| ||||||||||||| |||||||  |||||||| |||||||| ||||| ||   |    
T  456442 ggaagctactgaagatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttctacgta 456343  T
Q  362 tcactttaattttctagtg 380  Q
    ||||||| ||||| |||||    
T  456342 tcactttgattttttagtg 456324  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 48619051 - 48619169
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||| |||||||| |||||||||||||| || | |    
T  48619051 ggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttctacaaa 48619150  T
Q  362 tcactttaattttctagtg 380  Q
    ||| |||||||||||||||    
T  48619151 tcattttaattttctagtg 48619169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 376
Target Start/End: Complemental strand, 8019826 - 8019713
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    |||| |||||||||||||||| |||||| |||||||  ||||||||||| |||||||||| |||||||| |||||||| ||||||||| | || || |||    
T  8019826 ggaatctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagtaattctacaga 8019727  T
Q  362 tcactttaattttct 376  Q
    ||| |||||||||||    
T  8019726 tca-tttaattttct 8019713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 376
Target Start/End: Complemental strand, 29213802 - 29213696
Alignment:
Q  271 tgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatg-agtgctggttggctcgttaatttaagcatttttagagatcacttta 369  Q
    |||||||||||| |||||| |||||||| ||||||||||| ||| |||| | | |||| || ||| |||| |||||||||||||| || |||||||||||    
T  29213802 tgaagatgagttggaatgttcaactcaaccatacttggcgtgaaagaaaaaaggagtgttgattgactcgctaatttaagcatttctacagatcacttta 29213703  T
Q  370 attttct 376  Q
    |||||||    
T  29213702 attttct 29213696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 27156249 - 27156131
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||| |||||||| |||||| ||||||| || |||    
T  27156249 ggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttctacaga 27156150  T
Q  362 tcactttaattttctagtg 380  Q
    ||| |||||||||||||||    
T  27156149 tcattttaattttctagtg 27156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 262 - 376
Target Start/End: Original strand, 54346852 - 54346966
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||  ||||||||||| |||||||||| |||||||| |||||||| |||||||||||||| || |||    
T  54346852 ggaagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacaga 54346951  T
Q  362 tcactttaattttct 376  Q
    ||| |||||||||||    
T  54346952 tcattttaattttct 54346966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 54812331 - 54812238
Alignment:
Q  261 aggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcattt 354  Q
    |||||||||||||  |||  |||| |||| ||| |||| ||||||||||| ||||||||||  ||||| | |||||| | |||||| |||||||    
T  54812331 aggaagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 54812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 18259221 - 18259103
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    |||||||||||||||| ||||  ||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||  | |||    
T  18259221 ggaagctgctgaagataagttgaaatgttcaactcaaccatacctggcgcgaaggaaatatgagtgctgattggctcgctaatttaagcatttcgacaga 18259122  T
Q  362 tcactttaattttctagtg 380  Q
    ||| |||||||||||||||    
T  18259121 tcattttaattttctagtg 18259103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 22540327 - 22540445
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||||  ||||||||| ||||| || ||| |||| |||||||||||||| || |||    
T  22540327 ggaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttctacaga 22540426  T
Q  362 tcactttaattttctagtg 380  Q
    ||| || ||||||||||||    
T  22540427 tcatttaaattttctagtg 22540445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 380
Target Start/End: Complemental strand, 34080819 - 34080702
Alignment:
Q  263 gaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagagat 362  Q
    |||||||||||||||| ||| |||||| |||||||| ||||||||||| |||||||| ||||||| || |||||| | |||||||| |||||||| | ||    
T  34080819 gaagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaatttaaacatttttacatat 34080720  T
Q  363 cactttaattttctagtg 380  Q
    |||||||||||| |||||    
T  34080719 cactttaattttatagtg 34080702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 36894498 - 36894380
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||| ||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| ||||| || |||||||| |||||||||||||| || |||    
T  36894498 ggaagttgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcatttatacaga 36894399  T
Q  362 tcactttaattttctagtg 380  Q
    ||| |||||||||||||||    
T  36894398 tcattttaattttctagtg 36894380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 380
Target Start/End: Complemental strand, 34389885 - 34389769
Alignment:
Q  264 aagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagagatc 363  Q
    |||||||||||||||| || |||||| |||||||| ||||||| ||| |||||||||| |||||||| |||||||| ||||||||||||||||| | |||    
T  34389885 aagctgctgaagatgatttggaatgttcaactcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttttacatatc 34389786  T
Q  364 actttaattttctagtg 380  Q
    | ||||||||| |||||    
T  34389785 attttaattttttagtg 34389769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 17795872 - 17795821
Alignment:
Q  138 aaatgattatagagaccactaaatcctttagattaaggttgtaattacgatt 189  Q
    ||||||||||| ||| | ||||||| ||||||||||||||||||||||||||    
T  17795872 aaatgattataaagatctctaaatcatttagattaaggttgtaattacgatt 17795821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 17795958 - 17795913
Alignment:
Q  82 aactctcattgcaactatgttgcatactgtgacattgcagcataat 127  Q
    |||||||||||||||| ||||||||||| ||| |||||| ||||||    
T  17795958 aactctcattgcaactctgttgcatactatgatattgcaccataat 17795913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 7305162 - 7305044
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    |||| |||||||||||||||| |||| | |||||||| ||||||||||| |||||||||| |||||||| |||||||  |||||||||||||| || |||    
T  7305162 ggaacctgctgaagatgagttggaattttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttctacaga 7305063  T
Q  362 tcactttaattttctagtg 380  Q
    |||||||||||||||||||    
T  7305062 tcactttaattttctagtg 7305044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 13187005 - 13187117
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||| || | |    
T  13187005 ggaagctgctgaagacgagttggaatgttcaactcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacata 13187104  T
Q  362 tcactttaatttt 374  Q
    ||| |||||||||    
T  13187105 tcattttaatttt 13187117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 6599036 - 6599154
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||| |||||||||||| || |||||| |||||||| |||| |||||| |||||||||| |||||||| |||||||| |||||||||||||| || | |    
T  6599036 ggaagttgctgaagatgaattggaatgttcaactcaaccataattggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttctacata 6599135  T
Q  362 tcactttaattttctagtg 380  Q
    ||||||| ||||| |||||    
T  6599136 tcactttgattttttagtg 6599154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 376
Target Start/End: Complemental strand, 40426249 - 40426135
Alignment:
Q  262 ggaagctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagaga 361  Q
    ||||||||||||||||||||| |||||| |||||||  |||| |||| | |||||||||| |||||||| ||| |||| |||||||||||||| || |||    
T  40426249 ggaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgctaatttaagcatttctacaga 40426150  T
Q  362 tcactttaattttct 376  Q
    ||| |||||||||||    
T  40426149 tcattttaattttct 40426135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 37307366 - 37307265
Alignment:
Q  272 gaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagagatcactttaat 371  Q
    |||||||||||  ||||| |||||||| |||||||| || |||||||||| |||||||| |||||||||||| |||||||||| ||  ||||||||||||    
T  37307366 gaagatgagttgaaatgttcaactcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttctacggatcactttaat 37307267  T
Q  372 tt 373  Q
    ||    
T  37307266 tt 37307265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 380
Target Start/End: Complemental strand, 40190496 - 40190383
Alignment:
Q  267 ctgctgaagatgagttagaatgtacaactcaatcatacttggcgcgaaggaaatatgagtgctggttggctcgttaatttaagcatttttagagatcact 366  Q
    |||||||||||||||| |||||| |||||||| |||||||| |  |||||||||| |||||  | ||| |||  ||| |||||||||| ||  |||||||    
T  40190496 ctgctgaagatgagttggaatgttcaactcaaccatacttgacatgaaggaaataggagtgtagattgactcactaacttaagcatttatacggatcact 40190397  T
Q  367 ttaattttctagtg 380  Q
    ||||||| ||||||    
T  40190396 ttaatttactagtg 40190383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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