View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_13 (Length: 390)
Name: NF19630_low_13
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 34539195 - 34539576
Alignment:
| Q |
11 |
catagggataaacagaaatttcatatctcctggatgcaattctaactaccaaacagtgggttttcctagctattgagtcaattcaatcctttgatcaagc |
110 |
Q |
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| T |
34539195 |
catagggataaacagaaatttcatatctcctggatgcaattctaactaccaaacagtgggttttcctagctattgagtcaattcaatcctttgatcaagc |
34539294 |
T |
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| Q |
111 |
ttgatatcaatttgaaagcgacacgggtaagtacataa--tctatccccccagcccacataacatgaaggaaatttgattgccaagatcaccaatataat |
208 |
Q |
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| T |
34539295 |
ttgatatcaatttgaaagcgacaagggtaagtacataagttctatccccccagcccacataacatgaaggaaatttgattgccaagatcaccaatataat |
34539394 |
T |
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| Q |
209 |
aaacattgaagctaataagtaataaaagtgtgaattacaaaaggacaagaagaaatttacaaaaatgacataaacctaaagtaaaggcatacatgcatac |
308 |
Q |
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| T |
34539395 |
aaacattgaagctaataagtaataaaagtgtgaattacaaaaggccaataagaaatttacaaaaatgacataaacctaaagtaaaggcatacatgcatac |
34539494 |
T |
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| Q |
309 |
cagctttccactttcggagaaccatttactgaacaaagaatgtgcattcacttcaaaaagctgagcctgtgggaatctgagt |
390 |
Q |
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| T |
34539495 |
cagctttccgctttcggagaaccatttactgaacaaagaatgtgcattcacttcaacaagctgagcctgtgggaatctgagt |
34539576 |
T |
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