View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_16 (Length: 376)
Name: NF19630_low_16
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 36161485 - 36161834
Alignment:
| Q |
12 |
agagtcctgttctttctcgtgtgccatcaagtccattggagaatactgaattaggaccattgtgtttgtgtccaagaggaagatggtagttaattaannn |
111 |
Q |
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| T |
36161485 |
agagtcctgttctttctcgtgtgccatcaagtccattggagaatactgaattagcaccattgtgtttgtgtccaagaggaagatggtaattaattaattt |
36161584 |
T |
|
| Q |
112 |
nnnnaatacttgctagtttgaatagtttttatatctgatttcaaaagtttaaccttagacttactgtggcnnnnnnnnaattgatttaatttcaggtatg |
211 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36161585 |
ttttaatacttgctagtttgaataatttttatatctgatttcaaaagtttaaccttagacttactgtggcttttttttaattgatttaatttcaggtatg |
36161684 |
T |
|
| Q |
212 |
caatttgctgtttctttattctggtttgccttgtagctgttatcctttttatcattgatatcgttcatcatcataaataaagctacatgaattttctcaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36161685 |
caatttgctgtttctttattctggtttgccttgtagctgttatcctttttatcattgatatcgttcatcatcataaataaagctacatgaattttctcaa |
36161784 |
T |
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| Q |
312 |
ttagagaatggaaaatgacgttaggatgatggttagatgcatgtaaaatg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36161785 |
ttagagaatggaaaatgacgttaggatgatggttagatgcatgtaaaatg |
36161834 |
T |
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