View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19630_low_2 (Length: 569)
Name: NF19630_low_2
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_2 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0244 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 131 - 569
Target Start/End: Complemental strand, 2333121 - 2332687
Alignment:
| Q |
131 |
cttcttgggaaattttgatcgacttccagatgttgctagtaacgtgttgttgtatcatgagagataactccaagcaaagaataaataaataaggtagagt |
230 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2333121 |
cttcttgggaaattttgatcgacttccagatgttgctagtaacatgttgt---atcatgagagataactccaagcaaagaataaataaataaggtagagt |
2333025 |
T |
|
| Q |
231 |
ggatcttcttgtggtaaacccctcttcggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatca |
330 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2333024 |
ggatcttcttgtggtaaacccctctacggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaactcatgatca |
2332925 |
T |
|
| Q |
331 |
aattaattgtggagggaggaaacccaaattccgaaagggttaaccttaggaaattccgatctacccaatcataagtcttctcaaagtccactataaataa |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2332924 |
aattaattgtggagggaggaaacccaaattccgaaagggttaaccttaggaaattccaatctacccaatcataagtcttctcaaagtccactataaataa |
2332825 |
T |
|
| Q |
431 |
taaaaatcatttgttaccttttcttcctgtgcatacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagct |
530 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
2332824 |
taaaaatcatttgttacctttt-ttcctgcgcatacagtgagaaatctcttgagcaataattgtgttatcagaagtacctctattgggaatgaaagagct |
2332726 |
T |
|
| Q |
531 |
gtgaagaggaccaataaaatcatccaagaaaggtctgat |
569 |
Q |
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| T |
2332725 |
gtgaagaggaccaataaaatcatccaagaaaggtctgat |
2332687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 2333153 - 2333120
Alignment:
| Q |
15 |
tatagtccggaaggaataatcttgtagcacatct |
48 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2333153 |
tatagtccggaaggaataatcttgtagcacatct |
2333120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 552
Target Start/End: Original strand, 1261133 - 1261631
Alignment:
| Q |
57 |
tttaatttgtgagctcttggctttggtaaagagaagacaatcatcaacaagtaatagatgagaaaaactagggccttcttgggaaattttgatcgacttc |
156 |
Q |
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||||| ||||||||| ||||||| || || ||||||||||||||| ||| ||| || |||||||| || || || | | ||||| || |||| | || |
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| T |
1261133 |
tttaacttgtgagcttttggcttcagtgaaaagaagacaatcatcagcaaataaaaggtgagaaaagcttggtccatgacgagaaatctttatcggcctc |
1261232 |
T |
|
| Q |
157 |
cagatgttgctagtaacgtgttgttgtatcatgagagataa---ctccaagcaaagaataaataaataaggt-agagtggatcttcttgtggtaaacccc |
252 |
Q |
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|| ||||| ||||||| || | ||||||||| |||||||| ||||| |||||||| ||||||||||||| | ||||||||| ||||| ||||||||| |
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| T |
1261233 |
caagtgttgttagtaacttggttttgtatcattagagataatttctccatgcaaagaacaaataaataaggtgatagtggatctccttgtcgtaaacccc |
1261332 |
T |
|
| Q |
253 |
tcttcggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatcaaattaattgtggagggaggaaa |
352 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||| |||||||||||||| || | |||||| |
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| T |
1261333 |
tctttggtttgaaactatcaagtttttcaccattccacttaagagaaagggaagaagatgtaatacaactcatgatcaaattaataatgagagaaggaaa |
1261432 |
T |
|
| Q |
353 |
cccaaattccgaaagggttaaccttaggaaattccgatctacccaatcataagtcttctcaaagtccactataaataataaaaatcatttgttacctttt |
452 |
Q |
| |
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||||||||| |||| |||||||| || |||| || |||||||| |||||| | ||||||||||||||| |||||| || || | ||| ||||||||| |
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| T |
1261433 |
cccaaattcagaaaaagttaacctaagaaaatcccaatctaccctatcatacgccttctcaaagtccaccttaaatagtagaagacctttcttacctttt |
1261532 |
T |
|
| Q |
453 |
cttcctgtgcatacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatca |
552 |
Q |
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||| ||||||| || ||| ||| |||||||||||||| | ||||||||||| ||||||||| ||||| |||||||| |||||||| |||||||||||| |
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|
| T |
1261533 |
-ttcttgtgcatgcaatgaacaatttcttgagcaataatggcgttatcagaagtacctctatttggaataaaagagctttgaagagggccaataaaatca |
1261631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 12670691 - 12670590
Alignment:
| Q |
258 |
ggtttgaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatcaaattaattgtggagggaggaaacccaa |
357 |
Q |
| |
|
||||||||||| | ||||||||||| ||| ||||||| |||||| || |||| | |||| ||||| |||||||||||||| |||| | ||||| ||||| |
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| T |
12670691 |
ggtttgaaactttaaagtttttcacaatttcacttaagagaaagagaggaaaggataatgcaactcatgatcaaattaataatggatgaaggaaccccaa |
12670592 |
T |
|
| Q |
358 |
at |
359 |
Q |
| |
|
|| |
|
|
| T |
12670591 |
at |
12670590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 167 - 566
Target Start/End: Original strand, 15927 - 16328
Alignment:
| Q |
167 |
tagtaacgtgttgttgtatcatgagagataa---ctccaagcaaagaataaataaataaggt-agagtggatcttcttgtggtaaacccctcttcggttt |
262 |
Q |
| |
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||||||| || | ||||||||| |||||||| ||||| |||||||| ||||||||||||| | ||||||||| ||| | ||||||||||||| ||||| |
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| T |
15927 |
tagtaacttggttttgtatcattagagataatatctccatgcaaagaacaaataaataaggtgatagtggatctccttctcgtaaacccctctttggttt |
16026 |
T |
|
| Q |
263 |
gaaactatcaagtttttcaccattccacttaaaagaaagtgaagaaaaggtaatacaacttatgatcaaattaattgtggagggaggaaacccaaattcc |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||| |||||||||||||| || | ||||||||||||||| |
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| T |
16027 |
gaaactatcaagtttttcaccattccacttaagagaaagggaagaagatgtaatacaactcatgatcaaattaataatgagagaaggaaacccaaattca |
16126 |
T |
|
| Q |
363 |
gaaagggttaaccttaggaaattccgatctacccaatcataagtcttctcaaagtccactataaataataaaaatcatttgttaccttttcttcctgtgc |
462 |
Q |
| |
|
||||| ||||||| || |||| || |||||||| |||||| || |||| |||||||| |||||| || || | ||| |||||||| ||| ||||| |
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| T |
16127 |
gaaagagttaaccaaagaaaatcccaatctaccctatcatacgtattcttcaagtccaccttaaatagtagaagacctttcttaccttt--ttcttgtgc |
16224 |
T |
|
| Q |
463 |
atacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaag |
562 |
Q |
| |
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|| || ||| ||| ||||||| |||||| ||||||||||| ||||||||| |||| ||| |||| |||||||| |||||||||||||||||||||| |
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|
| T |
16225 |
atgcaatgaacaatttcttgagtaataatgacgttatcagaagtacctctattcagaataaaatagctttgaagagggccaataaaatcatccaagaaag |
16324 |
T |
|
| Q |
563 |
gtct |
566 |
Q |
| |
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|||| |
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|
| T |
16325 |
gtct |
16328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 346 - 569
Target Start/End: Original strand, 556 - 778
Alignment:
| Q |
346 |
gaggaaacccaaattccgaaagggttaaccttaggaaattccgatctacccaatcataagtcttctcaaagtccactataaataataaaaatcatttgtt |
445 |
Q |
| |
|
|||||||||||||||| | ||||||||| || | || |||| ||| |||| |||||||| ||||||||||||||| |||| |||||||| ||| | |
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|
| T |
556 |
gaggaaacccaaattcagtaagggttaatctcaataagttccaatccaccctatcataagctttctcaaagtccactttaaacaataaaaaatctttcat |
655 |
T |
|
| Q |
446 |
accttttcttcctgtgcatacagtgagaaatctcttgagcaataattgtgttatcagaagcacctctattaggaatgaaagagctgtgaagaggaccaat |
545 |
Q |
| |
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||||||| ||| ||||||| |||| |||||||| ||||| || ||||||||||||| |||||||||||||||||||||| | || ||||| ||||| |
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|
| T |
656 |
acctttt-ttcttgtgcatgtggtgatcgatctcttgtgcaatgatggtgttatcagaagtacctctattaggaatgaaagagttttggagagggccaat |
754 |
T |
|
| Q |
546 |
aaaatcatccaagaaaggtctgat |
569 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
755 |
aaaatcatccaagaaaggtttgat |
778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 40644448 - 40644405
Alignment:
| Q |
245 |
taaacccctcttcggtttgaaactatcaagtttttcaccattcca |
289 |
Q |
| |
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||||||||| || ||||||||||| |||||||||||||||||||| |
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|
| T |
40644448 |
taaacccct-ttaggtttgaaactttcaagtttttcaccattcca |
40644405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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