View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_20 (Length: 359)
Name: NF19630_low_20
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 10995801 - 10995474
Alignment:
| Q |
15 |
aacctgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcc |
114 |
Q |
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| T |
10995801 |
aacctgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccaacgcc |
10995702 |
T |
|
| Q |
115 |
caaaccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaaggaccacgcgcctgtaatcttccaaagatttt |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10995701 |
caaaccgatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaaggaccacgcgcctgtaatattccaaagatttt |
10995602 |
T |
|
| Q |
215 |
catttctagatcctttttcatgtaaggtttatcacccttgtttaaaaccaattgaccgcataaattccgcttgcaagcatccaatcctttctcatagact |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
10995601 |
catttctagatcctttttcatgtaaggtttatcacccttgtttaaaaccaattgaccacgtaaattccgcttgcaagcatccaatcctttctcatagact |
10995502 |
T |
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| Q |
315 |
gtctgtgagatcttaatgcttagaacct |
342 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10995501 |
gtctgtgagatcttaatgcttagaacct |
10995474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 14243297 - 14243627
Alignment:
| Q |
19 |
tgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcccaaa |
118 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
14243297 |
tgtgcgtgagtgttacattgcgtatagatactgaagtctttagtccattcgaacaaccgcaacagtccaggtttcaaattcaccgtacccatcgcccaaa |
14243396 |
T |
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| Q |
119 |
ccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaaggaccacgcgcctgtaatcttccaaag-------at |
211 |
Q |
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| T |
14243397 |
ccgatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacacaaggaccacgcgcctgtaatcttccaaagcttctgaag |
14243496 |
T |
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| Q |
212 |
tttcatttctagatcctttttcatgtaaggtttatcacccttgtttaaaaccaattgaccgcataaattccgcttgcaagcatccaatcctttctcatag |
311 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| || |||||||||||||||| |
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| T |
14243497 |
tttcagttctagatcatttttcatgtaaggtttatcacccttgttcaaaaccaaacgaccgcgtaaattccgcttgcaaacaaccaatcctttctcatac |
14243596 |
T |
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| Q |
312 |
actgtctgtgagatcttaatgcttagaacct |
342 |
Q |
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|||||||| |||||||||||||||||||||| |
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| T |
14243597 |
actgtctgcgagatcttaatgcttagaacct |
14243627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 8478396 - 8478272
Alignment:
| Q |
85 |
ccaggtttcaaattcaccgtacccatcgcccaaaccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaagg |
184 |
Q |
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|||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||| | ||||||||| | ||||| ||||||||| | | || |
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| T |
8478396 |
ccaggtttcaaatttaccgttcccatcgcccaaaccgatcgtaaatcttcctcggaggcaaaataaaattcataataacccctacctaaagaaagaaggg |
8478297 |
T |
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| Q |
185 |
accacgcgcctgtaatcttccaaag |
209 |
Q |
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|||||||||||| |||||||||| |
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| T |
8478296 |
accacgcgcctgatgtcttccaaag |
8478272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 19937765 - 19937911
Alignment:
| Q |
63 |
ccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcccaaaccaatcgtaaatcatcctcggaggcaaatgagaattcataaaat |
162 |
Q |
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|||||| ||||||| ||| | |||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||| | ||||||||| | |
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| T |
19937765 |
ccattcaaacaaccttaacaaaccaggtttcaaatttaccgttcccatcgcccaaaccgatcgtaaatcttcctcggaggcaaaataaaattcataataa |
19937864 |
T |
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| Q |
163 |
ccccttcctaaagaacgcaaggaccacgcgcctgtaatcttccaaag |
209 |
Q |
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||||| ||||||||| ||| |||||||||||||| |||||||||| |
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| T |
19937865 |
cccctacctaaagaaagcagggaccacgcgcctgatgtcttccaaag |
19937911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 22982053 - 22982201
Alignment:
| Q |
19 |
tgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcccaaa |
118 |
Q |
| |
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||||| |||||||||||||| | | ||| |||||||||| |||||||| ||||| || | || ||| || |||||||| ||||| ||||| |||| | |
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| T |
22982053 |
tgtgcatgagtgttacgttgtttgtgcatattgaagtctttggtccattcaaacaatcggagaactccgggcttcaaattgaccgtccccataacccata |
22982152 |
T |
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| Q |
119 |
ccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatcccct |
167 |
Q |
| |
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||| || | ||||||||| |||||||| |||||||||| || ||||| |
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| T |
22982153 |
ccatgcgcatatcatcctcagaggcaaaaaagaattcatagaaacccct |
22982201 |
T |
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