View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_24 (Length: 256)
Name: NF19630_low_24
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 10245417 - 10245191
Alignment:
| Q |
18 |
tcaactaaatataagtatttgaaaacaaaataaaggtacgtaaacaaaataaatgtaagagaggtgttagttttaaggattaaatattcgtgttttaaag |
117 |
Q |
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| T |
10245417 |
tcaactaaatataagtatttgaaaacaaaataaaggtacgtaaacaaaataaatgtaagagaggtgttagttttaaggattaaatatttgtgttttaaag |
10245318 |
T |
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| Q |
118 |
attgtaaattcattctttttatgtgagtttgaaaatttacattctttattttaatttattttgactaaaagtaatatattcattcaaattgtgtggtaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10245317 |
attgtaaattcattctttttatgtgagtttgaaattttacattctttattttaatttattttgactaaaagtaatatattcattcaaattgtgtggtaga |
10245218 |
T |
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| Q |
218 |
tttcttcgagtacaacacaaagttcat |
244 |
Q |
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| T |
10245217 |
tttcttcgagtacaacacaaagttcat |
10245191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 73 - 244
Target Start/End: Complemental strand, 10245179 - 10245004
Alignment:
| Q |
73 |
taagagaggtgttagttttaaggattaaatattcgtgttttaaagattgtaaattcattctttttatgtgagt----ttgaaaatttacattctttattt |
168 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
10245179 |
taagagaggtgttagatttaaggattaaatatttgtgttttaaagattgtaaattcattctttatatgtgagtgagtttgaaatgttacattctttattt |
10245080 |
T |
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| Q |
169 |
taatttattttgactaaaagtaatatattcattcaaattgtgtggtagatttcttcgagtacaacacaaagttcat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
10245079 |
taatttattttgactaaaagtaatatattcattcaaatcgtgtggtagatttcttcgagtacaacacaaatttcat |
10245004 |
T |
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