View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19630_low_26 (Length: 241)

Name: NF19630_low_26
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19630_low_26
NF19630_low_26
[»] chr7 (6 HSPs)
chr7 (113-226)||(12823128-12823241)
chr7 (53-98)||(3830092-3830136)
chr7 (45-98)||(12167423-12167475)
chr7 (48-85)||(36343541-36343578)
chr7 (48-92)||(6781826-6781869)
chr7 (45-77)||(35444193-35444225)
[»] chr1 (3 HSPs)
chr1 (48-98)||(32962582-32962631)
chr1 (51-98)||(44243895-44243941)
chr1 (48-89)||(48646727-48646768)
[»] chr6 (3 HSPs)
chr6 (49-98)||(18253332-18253380)
chr6 (45-97)||(13496132-13496183)
chr6 (53-98)||(32524413-32524457)
[»] chr2 (8 HSPs)
chr2 (48-92)||(20200724-20200767)
chr2 (51-98)||(23250313-23250359)
chr2 (48-98)||(660815-660864)
chr2 (53-98)||(20565068-20565112)
chr2 (45-98)||(25186235-25186287)
chr2 (53-98)||(28550477-28550522)
chr2 (50-98)||(27906212-27906260)
chr2 (45-89)||(32458318-32458361)
[»] scaffold0015 (1 HSPs)
scaffold0015 (55-98)||(75209-75252)
[»] chr8 (3 HSPs)
chr8 (47-98)||(34645078-34645129)
chr8 (45-90)||(29652234-29652278)
chr8 (48-92)||(13124362-13124405)
[»] chr4 (3 HSPs)
chr4 (47-98)||(19479470-19479520)
chr4 (53-98)||(23775542-23775586)
chr4 (48-92)||(19588173-19588216)
[»] chr3 (2 HSPs)
chr3 (49-98)||(21263159-21263208)
chr3 (53-98)||(27065725-27065769)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 12823241 - 12823128
Alignment:
Q  113 aaggatgtctacatgcttgcaattgaaagtggtatgaaaaacttaattataagacaatatccatatatgatttgcaattgcaagtnnnnnnngagaatta 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  12823241 aaggatgtctacaagcttgcaattgaaagtggtatgaaaaacttaattataagacaatatccatatatgatttgcaattgcaagtaaaaaaagagaatta 12823142  T
Q  213 aacctgcttgattt 226  Q
    ||||||||||||||    
T  12823141 aacctgcttgattt 12823128  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 3830092 - 3830136
Alignment:
Q  53 acaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||    
T  3830092 acaatgcataata-tatgcaaggtccagggttcaaaccccagccac 3830136  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 12167423 - 12167475
Alignment:
Q  45 tgatatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    |||||||||||||||||||| |||| |||||||| |  ||||||||||||||||    
T  12167423 tgatatgaacaatgcataat-atattcaaggtccgggattcaaaccccaaccac 12167475  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 36343578 - 36343541
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttc 85  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  36343578 tatggacaatgcataataatatgcaaggtccagggttc 36343541  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 6781826 - 6781869
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaacccc 92  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||    
T  6781826 tatggacaatgcataa-aatatgcaaggtccagggttcaaacccc 6781869  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 35444225 - 35444193
Alignment:
Q  45 tgatatgaacaatgcataataatatgcaaggtc 77  Q
    |||||||||||||||||||||||||||| ||||    
T  35444225 tgatatgaacaatgcataataatatgcatggtc 35444193  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 32962582 - 32962631
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  32962582 tatgaacaatgcataa-aatatgcaaggtccagggttcaaaccccgaccac 32962631  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 44243895 - 44243941
Alignment:
Q  51 gaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  44243895 gaacaatgcataata-tatgtaaggtccagagttcaaaccccaaccac 44243941  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 48646768 - 48646727
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaac 89  Q
    |||| |||||||||||||||||||||||||| | ||||||||    
T  48646768 tatggacaatgcataataatatgcaaggtccggggttcaaac 48646727  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 18253380 - 18253332
Alignment:
Q  49 atgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  18253380 atgaacaatgcataata-tatgcaaggtccagggttcaaaccccatccac 18253332  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 13496132 - 13496183
Alignment:
Q  45 tgatatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaacca 97  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||| ||||    
T  13496132 tgatatgaacaatgcataat-atatgcaaggtccggagttcaaaccccgacca 13496183  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 32524457 - 32524413
Alignment:
Q  53 acaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||    
T  32524457 acaatgcataata-tatgcaaagtccagggttcaaaccccaaccac 32524413  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 20200724 - 20200767
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaacccc 92  Q
    |||||||||||||||||| |||||||||||||| |||||||||||    
T  20200724 tatgaacaatgcataata-tatgcaaggtccagggttcaaacccc 20200767  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 23250359 - 23250313
Alignment:
Q  51 gaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  23250359 gaacaatgcataata-tatgcaaggtccagggttcaaaccccgaccac 23250313  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 660864 - 660815
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||| |||||    
T  660864 tatggacaatgcataata-tatgcaaggtccagggttcaaaccccgaccac 660815  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 20565112 - 20565068
Alignment:
Q  53 acaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||    
T  20565112 acaatgcataata-tatgcaaggtccggggttcaaaccccaaccac 20565068  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 25186287 - 25186235
Alignment:
Q  45 tgatatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||| ||||||||||||| |||||||||||| | |||||||||||| ||||    
T  25186287 tgatatggacaatgcataata-tatgcaaggtccggggttcaaaccccagccac 25186235  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 28550522 - 28550477
Alignment:
Q  53 acaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||| |||||||||||||| |  ||||||||||||||||    
T  28550522 acaatgcataaaaatatgcaaggtccgggattcaaaccccaaccac 28550477  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 27906260 - 27906212
Alignment:
Q  50 tgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    |||||||||||||| ||||| |||||||| | |||||||||||| ||||    
T  27906260 tgaacaatgcataaaaatatacaaggtccggagttcaaaccccagccac 27906212  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 32458318 - 32458361
Alignment:
Q  45 tgatatgaacaatgcataataatatgcaaggtccagcgttcaaac 89  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||    
T  32458318 tgataagaacaatgcataata-tatgcaaggtccagggttcaaac 32458361  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 75209 - 75252
Alignment:
Q  55 aatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    |||||||||||||||||||||||||| |||| |||||| |||||    
T  75209 aatgcataataatatgcaaggtccagagttcgaaccccgaccac 75252  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 34645129 - 34645078
Alignment:
Q  47 atatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||| |||||||||||||||||||||||||| | |||| |||||| |||||    
T  34645129 atatggacaatgcataataatatgcaaggtccggggttcgaaccccgaccac 34645078  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 29652234 - 29652278
Alignment:
Q  45 tgatatgaacaatgcataataatatgcaaggtccagcgttcaaacc 90  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||    
T  29652234 tgataagaacaatgcataata-tatgcaaggtccagagttcaaacc 29652278  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 13124405 - 13124362
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaacccc 92  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  13124405 tatgaacaatgcataa-aatatgcaaggtccggggttcaaacccc 13124362  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 19479520 - 19479470
Alignment:
Q  47 atatgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  19479520 atatgaacaatgcataata-tatgcaaggtccggggttcaaaccccgaccac 19479470  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 23775542 - 23775586
Alignment:
Q  53 acaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||    
T  23775542 acaatgcataata-tatgcaaggtccagggttcgaaccccaaccac 23775586  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 19588173 - 19588216
Alignment:
Q  48 tatgaacaatgcataataatatgcaaggtccagcgttcaaacccc 92  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||    
T  19588173 tatggacaatgcataa-aatatgcaaggtccagggttcaaacccc 19588216  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 21263208 - 21263159
Alignment:
Q  49 atgaacaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||| |||||||||||  ||||| ||| |||||||||||||||||    
T  21263208 atgaacaatacataataatatataaggttcagagttcaaaccccaaccac 21263159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 27065769 - 27065725
Alignment:
Q  53 acaatgcataataatatgcaaggtccagcgttcaaaccccaaccac 98  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||    
T  27065769 acaatgcataa-aatatgcaaggtccagggttcaaaccccagccac 27065725  T

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