View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_31 (Length: 227)
Name: NF19630_low_31
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_31 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 24729452 - 24729233
Alignment:
| Q |
8 |
acagaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatgc |
107 |
Q |
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| T |
24729452 |
acagaatgaaaaggagaagtgttaaaagcatcgaaaatcaaatgtggaggaggatatacagaatctttgaaagaaaaaaactcatttctgacaaacatgc |
24729353 |
T |
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| Q |
108 |
aaagagcagggaagtaagatttctgaaattcatcatcaggcaaagttgccaaccaagattgttccacaagcatattaggtagtttaatgcgactcgtagt |
207 |
Q |
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| T |
24729352 |
aaagagcagggaagtaagatttctgaaattcatcatcaggcaaagcttccaaccaagattattccacaagcatatcaggtagtttaatgcgaccggtagt |
24729253 |
T |
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| Q |
208 |
taaagaatctgataaagaaa |
227 |
Q |
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| T |
24729252 |
taaagaatctgataaagaaa |
24729233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 28281253 - 28281036
Alignment:
| Q |
7 |
aacagaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatg |
106 |
Q |
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| T |
28281253 |
aacagaatgaaaaggagtagtgttaaaagcatcgaaaatcaaatgcggaggaggatatacagaatctttgaaagcaaaatactcatttccaacgaacatg |
28281154 |
T |
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| Q |
107 |
caaagagcagggaagtaagatttctgaaattcatcatcaggcaaagttgccaaccaagattgttccacaagcatattaggtagtttaatgcgactcgtag |
206 |
Q |
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| T |
28281153 |
caaagagccagggcgtacgatttctgaaat---tcatcaggtaaagcttccaaccaagattgttccacaagcatatcaggtagtttaatgcgacccgtaa |
28281057 |
T |
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| Q |
207 |
ttaaagaatctgataaagaaa |
227 |
Q |
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| T |
28281056 |
ccatagattctgataaagaaa |
28281036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 28289360 - 28289147
Alignment:
| Q |
11 |
gaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatgcaaa |
110 |
Q |
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| T |
28289360 |
gaatgaaaaggagtagtattaagagcattgaaaatcaaatgcgaaggaggatatacggaatctttgaaagcgaaaatctcattttggacgaacatgcaaa |
28289261 |
T |
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| Q |
111 |
gagcagggaagtaagatttctgaaattcatcatcaggcaaagttgccaaccaagattgttccacaagcatattaggtagtttaatgcgactcgtagttaa |
210 |
Q |
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| T |
28289260 |
gagccggggcgtaaggtttctgaaattcacca---ggtaatgcttccaaccaagattgctctacaagcatatccggtagtttaatgcgacctgtagccat |
28289164 |
T |
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| Q |
211 |
agaatctgataaagaaa |
227 |
Q |
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| T |
28289163 |
agattctgataaagaaa |
28289147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 28278351 - 28278280
Alignment:
| Q |
156 |
ccaaccaagattgttccacaagcatattaggtagtttaatgcgactcgtagttaaagaatctgataaagaaa |
227 |
Q |
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| T |
28278351 |
ccaaccaagattgctccacaagcatatccattagtttaatgcgacccgtagctaaagattatgataaagaaa |
28278280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 28746951 - 28747083
Alignment:
| Q |
7 |
aacagaatgaaaaagagaagtgttaaaagcatcgaaaatcaaatgcggaggaggatatatagaatctttgaaagnnnnnnnctcatttctgacaaacatg |
106 |
Q |
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| T |
28746951 |
aacagaatgaaaagcagtggtgttaaaagcatcgaaaatcaaatacggaggaggatatacagaatctttgagagcaaaatactcatttccgatgaacatg |
28747050 |
T |
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| Q |
107 |
caaagagcagggaagtaagatttctgaaattca |
139 |
Q |
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| T |
28747051 |
caaagagcaggggcgtaaggtttctgaaattca |
28747083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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