View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_32 (Length: 222)
Name: NF19630_low_32
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 23596208 - 23596402
Alignment:
| Q |
9 |
gagtgagatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgct |
108 |
Q |
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| T |
23596208 |
gagtgacatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgct |
23596307 |
T |
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| Q |
109 |
gaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtaaccgtgcctgc |
203 |
Q |
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| T |
23596308 |
gaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtaaccgtgcctgc |
23596402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 23587363 - 23587551
Alignment:
| Q |
16 |
atgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgctgaagaga |
115 |
Q |
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| T |
23587363 |
atgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaagcggaagagaagcaattttccgctgaagaga |
23587462 |
T |
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| Q |
116 |
tatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtaaccgtgcctgct |
204 |
Q |
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| T |
23587463 |
tatcttctatggttcttatgaaaatgaaggagattgcagaggcttatcttggtacaacgattaagaatgccgttgtaactgtgcctgct |
23587551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 8017036 - 8017218
Alignment:
| Q |
9 |
gagtgagatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgct |
108 |
Q |
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|||||| ||||| |||||||| || ||||| ||| |||| |||| ||| || |||||||| | || |||||||||| ||||| ||||||||| ||||| |
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| T |
8017036 |
gagtgacatgaagttgtggccttttaaggttattgctggtcctggtgaaaagccaatgattggtgttaactacaagggtgaggacaagcaatttgctgct |
8017135 |
T |
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| Q |
109 |
gaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgt |
191 |
Q |
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| T |
8017136 |
gaggaaatttcgtctatggtactcataaagatgcgtgagattgctgaagcttacctcggttcaactgtgaagaatgccgttgt |
8017218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 17717662 - 17717772
Alignment:
| Q |
94 |
aagcaattttctgctgaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtaa |
193 |
Q |
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| T |
17717662 |
aagcaatttgctgcagaagagatctcttccatggtactctggaagatgcgtgagattgcagaggcctactttggttctaccattaggaatgccgttgtta |
17717761 |
T |
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| Q |
194 |
ccgtgcctgct |
204 |
Q |
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| || |||||| |
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| T |
17717762 |
ctgtccctgct |
17717772 |
T |
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