View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_33 (Length: 220)
Name: NF19630_low_33
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 23071846 - 23071652
Alignment:
| Q |
10 |
agattatactcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttcgattttagtagatgatggtatggttgcaacttgcaatcaaattt |
109 |
Q |
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| T |
23071846 |
agattatattcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttcgattttagtagatgatggtatggttgcaactggcaatcaaattt |
23071747 |
T |
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| Q |
110 |
tgtgtaagtgcatgtgtgcctgcctatttcttaatattgctaagtattccatagtcctttaaaatcaattattccctaatccatagtaagttatg |
204 |
Q |
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| T |
23071746 |
tgtgtaagtgcatgtgtgcctgcctatttcttaatattgctaagtattccatagtcctttaaaatcaattattccctaatccatagtaagttatg |
23071652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 23095943 - 23095897
Alignment:
| Q |
19 |
tcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttc |
65 |
Q |
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| T |
23095943 |
tcaatgatgcatttcaaatgtgtcacaattttgaagtttgatgtttc |
23095897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 23127638 - 23127592
Alignment:
| Q |
19 |
tcaatgatgcaactcaaatgtgtcacaattttgaagtttgatatttc |
65 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
23127638 |
tcaatgatgcagctcaaatgtgtcacaattttaaagtttgatgtttc |
23127592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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