View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19630_low_5 (Length: 500)
Name: NF19630_low_5
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19630_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 481
Target Start/End: Original strand, 54058610 - 54059082
Alignment:
| Q |
9 |
agcatagggctagagaagcaagacagaaaagtgaaaaaactgtgaaaaatgctactgatgcagttgttaatacaacaatatcaagggttgatgagaatgg |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54058610 |
agcataaggctagagaagcaagacagaaaagtgaaaaaactgtgaaaaatgctactgatgcagttgttaatacaacaatatcaagggttgatgagaatgg |
54058709 |
T |
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| Q |
109 |
agttaatgcagaatcaaaaactgaggagcagcatgtggagactatggctggtaatggtttaaatgtaacagaatctaaaactgaggagaagcttattgac |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54058710 |
agttgatgcagaatcaaaaactgaggagcagcatgtggagactatggctggtaatggtttaaatgtaacagaatctaaaactgaggagaaacttattgac |
54058809 |
T |
|
| Q |
209 |
acaatggttgataaaagtgtcgttgaatctaaaaatgaggagcaacttgtggagatggtggcggagaatggtgtaagtataacagaatccaacaacgaga |
308 |
Q |
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| T |
54058810 |
acaatgattgataaaagtgtcgttgaatctaaaaatgaggagcaacttgtggagatgatggcggagaatggtgtaagtgtaacagaatccaacaacgaga |
54058909 |
T |
|
| Q |
309 |
agctcggggaaatgatggttgataaaagagtaacagaatctaaaaatgaggaacaacatatggnnnnnnncgaaaatgtagattcttttgagagtataaa |
408 |
Q |
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| T |
54058910 |
agctcgaggaaatgatggttgataaaagagtaacagaatctaaaaatgaggaacagcatatggagaaaaacgaaaatgtagattcttttgagagtataaa |
54059009 |
T |
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| Q |
409 |
aggtgctgcgactgaggaagtaggaaggaaaagtgcattgacagaaacaattaaggttggagatttatggtgt |
481 |
Q |
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| T |
54059010 |
aggtgctgcgactgaggaagtaggaaggaaaagtgcattgacagaaacaattaaggttggaggtttatggtgt |
54059082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 292
Target Start/End: Original strand, 54460006 - 54460065
Alignment:
| Q |
233 |
gaatctaaaaatgaggagcaacttgtggagatggtggcggagaatggtgtaagtataaca |
292 |
Q |
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| T |
54460006 |
gaatctaaaattgaggagcagcttgttgagatggttgctgataatggtgtaagtataaca |
54460065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 54459913 - 54459969
Alignment:
| Q |
254 |
cttgtggagatggtggcggagaatggtgtaagtataacagaatccaacaacgagaag |
310 |
Q |
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| T |
54459913 |
cttgtggagatgatggctgataatggtgtaagtataacaacatccaaaaatgagaag |
54459969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 306 - 481
Target Start/End: Complemental strand, 15037978 - 15037806
Alignment:
| Q |
306 |
agaagctcggggaaatgatggttgataaaagagtaacagaatctaaaaatgaggaacaacatatggnnnnnnncgaaaatgtagattcttttgagagtat |
405 |
Q |
| |
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||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||| |||||| || | |||||||||||| ||||||||||| |
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| T |
15037978 |
agaagctcgaggaaatgacggttgatgaaaaagtaacagaatctaaaaatgaggagcaacatgcggagaaaaaccaaaatgtagatttttttgagagtaa |
15037879 |
T |
|
| Q |
406 |
aaaaggtgctgcgactgaggaagtaggaaggaaaagtgcattgacagaaacaattaaggttggagatttatggtgt |
481 |
Q |
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|||||||||||| |||||||||| || |||| |||||||||||||||| ||||||| | ||| |||||||||| |
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| T |
15037878 |
aaaaggtgctgcaactgaggaagcag---ggaagagtgcattgacagaaatgattaaggctagaggtttatggtgt |
15037806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 233 - 360
Target Start/End: Complemental strand, 15038216 - 15038086
Alignment:
| Q |
233 |
gaatctaaaaatgaggagcaacttgtggagatggtggcggagaatggtgtaagtataacagaatccaacaacg---agaagctcggggaaatgatggttg |
329 |
Q |
| |
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|||||||||| ||||||| ||||| |||||| |||| ||| |||||||||||| ||||||||||||| | | ||||||||| |||||||| ||||| |
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| T |
15038216 |
gaatctaaaattgaggagaaacttttggagacggtgttggataatggtgtaagtgtaacagaatccaaagatgagaagaagctcgaggaaatgacggttg |
15038117 |
T |
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| Q |
330 |
ataaaagagtaacagaatctaaaaatgagga |
360 |
Q |
| |
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|| |||||||||||||||||||||||||||| |
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| T |
15038116 |
atgaaagagtaacagaatctaaaaatgagga |
15038086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 15038438 - 15038310
Alignment:
| Q |
233 |
gaatctaaaaatgaggagcaacttgtggagatggtggcggagaatggtgtaagtataacagaatccaacaacg---agaagctcggggaaatgatggttg |
329 |
Q |
| |
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||||||||| |||||||||||||| |||||| |||| ||| |||||||||||| |||||||||| || || | ||||||||| |||||||| ||||| |
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| T |
15038438 |
gaatctaaatatgaggagcaacttttggagacggtgttggataatggtgtaagtttaacagaatctaaaaatgagaagaagctcgaggaaatgacggttg |
15038339 |
T |
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| Q |
330 |
ataaaagagtaacagaatctaaaaatgag |
358 |
Q |
| |
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|| ||| |||||||||||||||||||||| |
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| T |
15038338 |
atgaaacagtaacagaatctaaaaatgag |
15038310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 365
Target Start/End: Complemental strand, 15038551 - 15038417
Alignment:
| Q |
234 |
aatctaaaaatgaggagcaacttgtggagatggtggcggagaatggtgtaagtataacagaatccaacaacgagaag---ctcggggaaatgatggttga |
330 |
Q |
| |
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|||| |||||||||||||||||| |||||| ||| ||| ||||||| |||| || ||||||| || || |||||| |||| |||||||| |||||| |
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| T |
15038551 |
aatcaaaaaatgaggagcaacttttggagacaatggtggataatggtgaaagtgtagcagaatctaaaaatgagaaggagctcgaggaaatgacggttga |
15038452 |
T |
|
| Q |
331 |
taaaagagtaacagaatctaaaaatgaggaacaac |
365 |
Q |
| |
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| |||||||||||||||||||| ||||||| |||| |
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| T |
15038451 |
tgaaagagtaacagaatctaaatatgaggagcaac |
15038417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 15038254 - 15038200
Alignment:
| Q |
306 |
agaagctcggggaaatgatggttgataaaagagtaacagaatctaaaaatgagga |
360 |
Q |
| |
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||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||| |
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| T |
15038254 |
agaagctcgaggaaatgatggttgatgaaacagtaacagaatctaaaattgagga |
15038200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 15038032 - 15037980
Alignment:
| Q |
306 |
agaagctcggggaaatgatggttgataaaagagtaacagaatctaaaaatgag |
358 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| |
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| T |
15038032 |
agaagctcgaggaaatgacggttgatgaaagagtaacagaatccaaaaatgag |
15037980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Complemental strand, 15038076 - 15038034
Alignment:
| Q |
316 |
ggaaatgatggttgataaaagagtaacagaatctaaaaatgag |
358 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
15038076 |
ggaaatgacggttgatgaaagagtaacagaatctaaagatgag |
15038034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 15038308 - 15038256
Alignment:
| Q |
306 |
agaagctcggggaaatgatggttgataaaagagtaacagaatctaaaaatgag |
358 |
Q |
| |
|
||||||||| |||||||| |||||| ||| ||||||||||||||||||||| |
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|
| T |
15038308 |
agaagctcgaggaaatgacagttgatgtaagtgtaacagaatctaaaaatgag |
15038256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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