View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19630_low_7 (Length: 461)

Name: NF19630_low_7
Description: NF19630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19630_low_7
NF19630_low_7
[»] chr3 (4 HSPs)
chr3 (1-235)||(54453923-54454157)
chr3 (298-446)||(54453714-54453862)
chr3 (74-139)||(21071531-21071596)
chr3 (60-136)||(34296407-34296483)
[»] chr4 (1 HSPs)
chr4 (64-141)||(22057314-22057391)
[»] chr2 (2 HSPs)
chr2 (3-39)||(25966731-25966767)
chr2 (6-40)||(32463041-32463075)
[»] chr8 (4 HSPs)
chr8 (63-167)||(16233628-16233738)
chr8 (8-39)||(27575725-27575756)
chr8 (60-141)||(2374728-2374808)
chr8 (142-206)||(19499431-19499495)
[»] scaffold0171 (1 HSPs)
scaffold0171 (66-106)||(9206-9246)
[»] scaffold0002 (1 HSPs)
scaffold0002 (78-167)||(15632-15726)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 54454157 - 54453923
Alignment:
Q  1 tgtgttgtgatgtccagtggtgtgattgcgcaagggtctcctcactgggttctaagcggttttggccccctgttttgggacacgtgacgtcttctaagcg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54454157 tgtgttgtgatgtccattggtgtgattgcgcaagggtctcctcaatgggttctaagcgattttggccccctgttttgggacacgtgacgtcttctaagcg 54454058  T
Q  101 attttgcaacattttctaaagttatagggtaaaattgttttgttagggggccaaaatagcaacttttaagaaatcaagatgttaaaaatgcatttaaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||    
T  54454057 attttgcaacattttctaaagttatagggtaaaattgttttgttagggggccaaaatagtaacttttaagaagtcaagaggttaaaaatgcatttaagcc 54453958  T
Q  201 tacaaataaataattagataatctcacaagtattt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  54453957 tacaaataaataattagataatctcacaagtattt 54453923  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 298 - 446
Target Start/End: Complemental strand, 54453862 - 54453714
Alignment:
Q  298 aaccctaataacaaatgagtgtcgtggccttgaattgaacaattattactgtcacaaatgtttgggtgagtatagtctccactctccaccacatatgctt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54453862 aaccctaataacaaatgagtgtcgtggccttgaattgaacaattattactgtcacaaatgtttaggtgagtatagtctccactctccaccacatatgctt 54453763  T
Q  398 aggacccataacaaactaatttggctaactctcaattcttggtggtatt 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54453762 aggacccataacaaactaatttggctaactctcaattcttggtggtatt 54453714  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 21071596 - 21071531
Alignment:
Q  74 tttgggacacgtgacgtcttctaagcgattttgcaacattttctaaagttatagggtaaaattgtt 139  Q
    |||||||||||||  |||  |||||| |||||||||| |||| ||||||||  |||||||||||||    
T  21071596 tttgggacacgtggtgtccactaagcaattttgcaacgttttgtaaagttagggggtaaaattgtt 21071531  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 34296483 - 34296407
Alignment:
Q  60 ttttggccccctgttttgggacacgtgacgtcttctaagcgattttgcaacattttctaaagttatagggtaaaatt 136  Q
    ||||||| ||||||||||| |||||||||||||||| ||    ||| ||||||||| |||| |||  ||||||||||    
T  34296483 ttttggctccctgttttggaacacgtgacgtcttctcagtagcttttcaacattttgtaaaattaaggggtaaaatt 34296407  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 22057391 - 22057314
Alignment:
Q  64 ggccccctgttttgggacacgtgacgtcttctaagcgattttgcaacattttctaaagttatagggtaaaattgtttt 141  Q
    ||||||||||||||||||||||| ||| || ||| |  ||||||||| |||| | ||||||| |||||||||||||||    
T  22057391 ggccccctgttttgggacacgtggcgttttttaaacagttttgcaacgttttatcaagttatggggtaaaattgtttt 22057314  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 25966731 - 25966767
Alignment:
Q  3 tgttgtgatgtccagtggtgtgattgcgcaagggtct 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  25966731 tgttgtgatgtccagtggtgtgattgcgcaagggtct 25966767  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 32463075 - 32463041
Alignment:
Q  6 tgtgatgtccagtggtgtgattgcgcaagggtctc 40  Q
    |||||||||||||||||||||||||||| ||||||    
T  32463075 tgtgatgtccagtggtgtgattgcgcaaaggtctc 32463041  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 16233628 - 16233738
Alignment:
Q  63 tggccccctgttttgggacacgtgacgtcttctaagcgattttgcaacattttctaaagttatagggtaaa------attgttttgttagggggccaaaa 156  Q
    ||||||||||||||||||||||||| ||||||| ||| | |||||||  |||| |||  |||  |||||||      ||| |||||||||||||||||||    
T  16233628 tggccccctgttttgggacacgtgatgtcttctcagcaactttgcaatgttttgtaagtttaaggggtaaaatttttatttttttgttagggggccaaaa 16233727  T
Q  157 tagcaactttt 167  Q
    | |||||||||    
T  16233728 tcgcaactttt 16233738  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 27575756 - 27575725
Alignment:
Q  8 tgatgtccagtggtgtgattgcgcaagggtct 39  Q
    ||||||||||||||||||||||||||||||||    
T  27575756 tgatgtccagtggtgtgattgcgcaagggtct 27575725  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 2374728 - 2374808
Alignment:
Q  60 ttttggccccctgttttgggacacgtgacgtcttctaagcgattttgcaacattttctaaagttatagggtaaaattgtttt 141  Q
    |||||||| ||||||||   ||| ||| |||||| |||||  |||||||||| |||||||||||| |||| |||||||||||    
T  2374728 ttttggcctcctgttttcaaacatgtggcgtcttttaagcagttttgcaacactttctaaagtta-aggggaaaattgtttt 2374808  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 19499431 - 19499495
Alignment:
Q  142 gttagggggccaaaatagcaacttttaagaaatcaagatgttaaaaatgcatttaaacctacaaa 206  Q
    |||||||||||||||| ||||||||| | || | | |  ||||||||||| ||||||||||||||    
T  19499431 gttagggggccaaaatcgcaactttttaaaagttacggggttaaaaatgcttttaaacctacaaa 19499495  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 9206 - 9246
Alignment:
Q  66 ccccctgttttgggacacgtgacgtcttctaagcgattttg 106  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  9206 cccccttttttgggacacgtgacgtcttctaagcaattttg 9246  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 15632 - 15726
Alignment:
Q  78 ggacacgtgacgtcttctaagcgattttgcaacattttctaaagttatagggtaaaattg-----ttttgttagggggccaaaatagcaactttt 167  Q
    |||||| ||||||||||| | | | ||||||||||||| ||||||||  |||||||||||     |||| |||||||| |||||| |||||||||    
T  15632 ggacacatgacgtcttctcaacaactttgcaacattttataaagttaaggggtaaaattgttatatttttttagggggtcaaaattgcaactttt 15726  T

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