View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_high_1 (Length: 882)

Name: NF19631_high_1
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_high_1
NF19631_high_1
[»] chr8 (4 HSPs)
chr8 (16-512)||(37290426-37290919)
chr8 (694-868)||(37294022-37294196)
chr8 (621-687)||(37291171-37291237)
chr8 (496-531)||(37291061-37291096)
[»] scaffold0602 (2 HSPs)
scaffold0602 (16-89)||(2478-2551)
scaffold0602 (92-144)||(2829-2882)
[»] chr4 (4 HSPs)
chr4 (16-89)||(8621896-8621969)
chr4 (16-89)||(8637081-8637154)
chr4 (92-144)||(8621566-8621618)
chr4 (92-144)||(8637432-8637484)
[»] chr1 (1 HSPs)
chr1 (94-144)||(19343726-19343776)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 37290426 - 37290919
Alignment:
Q  16 aagcatatgaaggaatcaaatttgtaagactgggacaatatccaaccgcgagatgtccaataaactcaagaagtgggcggaatcacctaaaacatacaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37290426 aagcatatgaaggaatcaaatttgtaagactgggacaatattcaaccgcgagatgtccaataaactcaagaagtgggcggaatcacctaaaacatacaca 37290525  T
Q  116 aagcacaatttacaaaaactgagtatttac-aaagatattgttaatatcttttaggtagggtaccttttacatccgagggtaccttttatgttcattaat 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  37290526 aagcacaatttacaaaaactgagtatttacaaaagatattgttaatatcttttaggccgggtaccttttacatccgagggtaccttttatgtccattaat 37290625  T
Q  215 gacagatcatacataattaaaaatctat-gnnnnnnnntcattttaggaaatctgggtgatgattnnnnnnntttaaaattatatataataagcatgttt 313  Q
    ||||||||||||||||||||||||||||           |||||||| ||| |||||||||||||        |||||||    ||| ||||||||||||    
T  37290626 gacagatcatacataattaaaaatctataaaaaaaaaaccattttagaaaaactgggtgatgattaaaaaaagttaaaat----tatcataagcatgttt 37290721  T
Q  314 taggaaaatcgagagatgaagatctataatacgtacaataataatagatttaaaacgaatattcttttgtttttaaggataacccaataataatataata 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37290722 taggaaaatcgagagatgaagatctataatacgtacaataataatagatttaaaacgaatattcttttgtttttaaggataacccaataataatataata 37290821  T
Q  414 ttgagaatacatcctgattagtttaataatatttatttgattgatnnnnnnnnnnntattcacttaacgttagtgcccatataacaaataagatagtta 512  Q
    |||||||| ||||||||||||||||||||||||||||||||||||           |||||| ||||| |||||||||||||||||||||| |||||||    
T  37290822 ttgagaatgcatcctgattagtttaataatatttatttgattgat-aaaaaaaaaatattcatttaacattagtgcccatataacaaataacatagtta 37290919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 694 - 868
Target Start/End: Original strand, 37294022 - 37294196
Alignment:
Q  694 attaaaaaattatcataacaaacatggttgtttagaactttataaaggaaatacgttctattatgaaggacttttaatggtttagattgtttttcacaaa 793  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37294022 attaaaaaattattataacagacatggttgtttagaactttataaaggaaatacgttctattctgaaggacttttaatggtttagattgtttttcacaaa 37294121  T
Q  794 gataaacaacacatttatatcattttcaagagattcaattataaccatttttgttaaaccttcattatcaaacat 868  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37294122 gataaacaacacatttatattattttcaagagattcaatcataaccatttttgttaaatcttcattatcaaacat 37294196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 621 - 687
Target Start/End: Original strand, 37291171 - 37291237
Alignment:
Q  621 aactatgtttgtaaccaaaaatattgtgtataacaaagttacaatgatattattacattataacaat 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37291171 aactatgtttgtaaccaaaaatattgtgtataacaaagttacaatgatgttattacattataacaat 37291237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 531
Target Start/End: Original strand, 37291061 - 37291096
Alignment:
Q  496 aacaaataagatagttacaataatgttttctttcaa 531  Q
    ||||||||| ||||||||||||||||||||||||||    
T  37291061 aacaaataacatagttacaataatgttttctttcaa 37291096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0602 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0602
Description:

Target: scaffold0602; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 2478 - 2551
Alignment:
Q  16 aagcatatgaaggaatcaaatttgtaagactgggacaatatccaaccgcgagatgtccaataaactcaagaagt 89  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||    
T  2478 aagcacatgaaggaatcaagtttgtaagactaggacaatattcaactgcgaggtgtccaataaactcaagaagt 2551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0602; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 2829 - 2882
Alignment:
Q  92 gcggaatcacctaaaacatacacaaagcacaatttac-aaaaactgagtattta 144  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2829 gcggaatcacctaaaacatacataaagcacaatttacaaaaaactgagtattta 2882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 8621969 - 8621896
Alignment:
Q  16 aagcatatgaaggaatcaaatttgtaagactgggacaatatccaaccgcgagatgtccaataaactcaagaagt 89  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||    
T  8621969 aagcacatgaaggaatcaagtttgtaagactaggacaatattcaactgcgaggtgtccaataaactcaagaagt 8621896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 8637081 - 8637154
Alignment:
Q  16 aagcatatgaaggaatcaaatttgtaagactgggacaatatccaaccgcgagatgtccaataaactcaagaagt 89  Q
    ||||| ||||||||||||| ||||||||||| ||||||||| | || ||||| |||||||||||||||||||||    
T  8637081 aagcacatgaaggaatcaagtttgtaagactaggacaatattctactgcgaggtgtccaataaactcaagaagt 8637154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 8621618 - 8621566
Alignment:
Q  92 gcggaatcacctaaaacatacacaaagcacaatttacaaaaactgagtattta 144  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  8621618 gcggaatcacctaaaacatacataaagcacaatttaaaaaaactgagtattta 8621566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 8637432 - 8637484
Alignment:
Q  92 gcggaatcacctaaaacatacacaaagcacaatttacaaaaactgagtattta 144  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  8637432 gcggaatcacctaaaacatacataaagcacaatttaaaaaaactgagtattta 8637484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 19343726 - 19343776
Alignment:
Q  94 ggaatcacctaaaacatacacaaagcacaatttacaaaaactgagtattta 144  Q
    |||||||||||||||| ||| ||||||||||||||||| | ||| ||||||    
T  19343726 ggaatcacctaaaacaaacataaagcacaatttacaaacagtgaatattta 19343776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University