View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_100 (Length: 238)
Name: NF19631_high_100
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_100 |
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| [»] chr5 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 10813482 - 10813704
Alignment:
| Q |
16 |
cagaatccatatccaacaattgtattattgtggaaaattgctgcgacaacgtccctttttataacaccggaagacgatttaacccaagagatgatgaggt |
115 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||| |||||| | |||||| ||||||| || || ||||||||||||||||||| ||| |
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| T |
10813482 |
cagattccatatccaacaattgtattatggtggaaaattgctgcgtcaacgttgcattttatcacaccgggaggcggtttaacccaagagatgatgtggt |
10813581 |
T |
|
| Q |
116 |
tcgaattttgtacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgagtaataataacagtggctggtgtattggaaga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10813582 |
tcgaattttgtacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgagtaataataactgtggctggtgtattggaaga |
10813681 |
T |
|
| Q |
216 |
ctcccaaagttttgtgtttcgac |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
10813682 |
ctcccaaagttttgtgtttcgac |
10813704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 12382017 - 12382068
Alignment:
| Q |
130 |
tgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctc |
181 |
Q |
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|||||||| ||| |||||||||||| ||||||||||||||| ||||||||| |
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| T |
12382017 |
tgtggttttgctttttgcatacaagaccattcgtggagtgtgccctttgctc |
12382068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 42577271 - 42577299
Alignment:
| Q |
210 |
ggaagactcccaaagttttgtgtttcgac |
238 |
Q |
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| T |
42577271 |
ggaagactcccaaagttttgtgtttcgac |
42577299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 51492104 - 51492326
Alignment:
| Q |
16 |
cagaatccatatccaacaattgtattattgtggaaaattgctgcgacaacgtccctttttataacaccggaagacgatttaacccaagagatgatgaggt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||| | |||||| || |||||| || ||| ||||||||||| ||| ||| |
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| T |
51492104 |
cagattccatatccaacaattgtattattgtggaaaattgatgcgtcaacgttgcattttatcgcatcggaaggcggtttgacccaagagattatgtggt |
51492203 |
T |
|
| Q |
116 |
tcgaattttgtacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgagtaataataacagtggctggtgtattggaaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51492204 |
tcgaattttgtacctgtggtttagctctttgcatacaagtccattcatggagtgtatcctttgctcgagtaataataatagtggctggtgtattggaaga |
51492303 |
T |
|
| Q |
216 |
ctcccaaagttttgtgtttcgac |
238 |
Q |
| |
|
||||||||| |||| |||||||| |
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|
| T |
51492304 |
ctcccaaagctttgcgtttcgac |
51492326 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 52964495 - 52964707
Alignment:
| Q |
26 |
atccaacaattgtattattgtggaaaattgctgcgacaacgtccctttttataacaccggaagacgatttaacccaagagatgatgaggttcgaattttg |
125 |
Q |
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|
|||||||||||||||||| ||||||||||| || | |||||| | |||||| |||||||||| || ||| ||||||||||||||| ||||||||||||| |
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| T |
52964495 |
atccaacaattgtattatcgtggaaaattgttgtgtcaacgttgcattttatcacaccggaaggcggtttgacccaagagatgatgtggttcgaattttg |
52964594 |
T |
|
| Q |
126 |
tacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgagtaataataacagtggctggtgtattggaagactcccaaagt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |
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| T |
52964595 |
tacctgtggtttagctctttgcatacaagtccattcatggagtgtatcctttgctcgagtaataataatagtggttggtgtattggaagactcccaaact |
52964694 |
T |
|
| Q |
226 |
tttgtgtttcgac |
238 |
Q |
| |
|
|||| |||||||| |
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|
| T |
52964695 |
tttgcgtttcgac |
52964707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 16927629 - 16927680
Alignment:
| Q |
16 |
cagaatccatatccaacaattgtattattgtggaaaattgctgcgacaacgt |
67 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
16927629 |
cagattccatatccaacaattgtattatggtggaaaattgctgcgtcaacgt |
16927680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 5185824 - 5186025
Alignment:
| Q |
23 |
catatccaacaattgtattattgtggaaaattgctgcgacaacgtccctttttataacaccggaagacgatttaacccaagagatgatgaggttcgaatt |
122 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| |||||| | |||||| |||||||||| || ||||||||||||||||||| |||| ||||| |
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| T |
5185824 |
catatccaacaattg-attatggtggaaaattgctgcgtcaacgttgcattttatcacaccggaaggcggtttaacccaagagatgatgtggtttgaatt |
5185922 |
T |
|
| Q |
123 |
ttgtacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgagtaataataacagtggctggtgtattggaagactcccaa |
222 |
Q |
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||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5185923 |
ttgaacctgtagtttagctctttacatacaagtccattcgtggagtgtatcctttgctcgagtaataacaacagtggctggtgtattggaagactcccaa |
5186022 |
T |
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| Q |
223 |
agt |
225 |
Q |
| |
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||| |
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|
| T |
5186023 |
agt |
5186025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 45187649 - 45187603
Alignment:
| Q |
139 |
gctctttgcatacaagtccattcgtggagtgtatcctttgctcgagt |
185 |
Q |
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||||||||||||||| ||||||||| ||| || |||||||||||||| |
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| T |
45187649 |
gctctttgcatacaactccattcgttgagagtgtcctttgctcgagt |
45187603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 34655924 - 34656041
Alignment:
| Q |
24 |
atatccaacaattgtattattgtggaaaattgctgcgacaacgtccctttttataacaccggaagacgatttaacccaagagatgatgaggttcgaattt |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| ||| || | |||||| ||||||||||||||||| ||||||||||||||| |||| |||||| |
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|
| T |
34655924 |
atatccaacaattatattattgtggaaaattgttgcgtcaatgttgcattttatcacaccggaagacgatttgacccaagagatgatgtggttggaattt |
34656023 |
T |
|
| Q |
124 |
tgtacctgtggtttagct |
141 |
Q |
| |
|
||||| |||||||||||| |
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| T |
34656024 |
tgtacatgtggtttagct |
34656041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 48882435 - 48882348
Alignment:
| Q |
97 |
acccaagagatgatgaggttcgaattttgtacctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgag |
184 |
Q |
| |
|
||||||||||| || ||| ||| |||||||||| |||||| ||||||||| |||| ||||||| ||||| ||| | |||||||||| |
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|
| T |
48882435 |
acccaagagatattgtggtccgagttttgtacctaaggtttaactctttgcacacaactccattcatggagagtaacttttgctcgag |
48882348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 23974883 - 23974984
Alignment:
| Q |
128 |
cctgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctcgagtaataataacagtggctggtgtattggaagactcccaaagttt |
227 |
Q |
| |
|
|||| |||||||||||||| || |||| |||||| |||||||| ||||||| ||||| ||| |||||| ||| || || ||||||||||| ||||| || |
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|
| T |
23974883 |
cctgaggtttagctctttgtatgcaagaccattcatggagtgtgtcctttgatcgagaaatgataacatcggcaggagtgttggaagactctcaaagctt |
23974982 |
T |
|
| Q |
228 |
tg |
229 |
Q |
| |
|
|| |
|
|
| T |
23974983 |
tg |
23974984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 648162 - 648111
Alignment:
| Q |
130 |
tgtggtttagctctttgcatacaagtccattcgtggagtgtatcctttgctc |
181 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
648162 |
tgtggtttttctttttgcatacaagaccattcgtggagtgtgtcctttgctc |
648111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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