View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_high_103 (Length: 231)
Name: NF19631_high_103
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_103 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 21592401 - 21592601
Alignment:
| Q |
17 |
aagggacatcttagtgccatctcttcggaccaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagtta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21592401 |
aagggacatcttagtgccatctcttcggaccaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagtta |
21592500 |
T |
|
| Q |
117 |
tcaaaatcaaacaatgtacttccttcctctctatcataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacctat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21592501 |
tcaaaatcaaacaatgtacttccttcctctctatcataccatgctcggtctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttat |
21592600 |
T |
|
| Q |
217 |
g |
217 |
Q |
| |
|
| |
|
|
| T |
21592601 |
g |
21592601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 42095685 - 42095574
Alignment:
| Q |
45 |
accaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcct |
144 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| |
|
|
| T |
42095685 |
accagtcttttggccaactcggcctcctttttctgaaatgaagcctcatctccaagaaaaagtgaagagctatcagaatcaaacaatgcgctgccttcct |
42095586 |
T |
|
| Q |
145 |
ctctatcatacc |
156 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42095585 |
ctctatcatacc |
42095574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 42095475 - 42095414
Alignment:
| Q |
151 |
cataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatac |
212 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42095475 |
cataccatgctcggtctgcatcatattccatctcttgacgcatgctttcagtaatctcatac |
42095414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University