View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_high_14 (Length: 533)

Name: NF19631_high_14
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_high_14
NF19631_high_14
[»] chr8 (5 HSPs)
chr8 (1-264)||(26466798-26467061)
chr8 (326-508)||(26466555-26466736)
chr8 (460-499)||(37225759-37225798)
chr8 (460-497)||(14227226-14227263)
chr8 (463-499)||(3508059-3508095)
[»] chr6 (3 HSPs)
chr6 (128-201)||(14370710-14370783)
chr6 (1-54)||(14370815-14370868)
chr6 (70-112)||(14370774-14370816)
[»] chr2 (1 HSPs)
chr2 (457-498)||(44605156-44605197)
[»] chr4 (1 HSPs)
chr4 (453-491)||(40783954-40783992)
[»] scaffold0011 (1 HSPs)
scaffold0011 (463-499)||(240037-240073)
[»] chr5 (1 HSPs)
chr5 (463-499)||(18607113-18607149)
[»] chr1 (2 HSPs)
chr1 (464-500)||(2471228-2471264)
chr1 (455-499)||(17080897-17080941)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 26467061 - 26466798
Alignment:
Q  1 ttctctcctctgctctcgctatggcgttcatcatcgaatctgcttggcaggttcgttcgttttctctactctctttcttatttccaaattattacatgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26467061 ttctctcctctgctctcgctatggcgttcatcatcgaatctgcttggcaggttcgttcgttttctctactctcttccttatttccaaattattacatgca 26466962  T
Q  101 ttttatttttatcataaacaatcttacttattgttattattattctctgttttttcttgattattcattttgatgtaatggaattggattattttattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26466961 ttttatttttatcataaacaatcttacttattgttattattattctctgttttttcttgattattcattttgatgtaatggaattggattattttattat 26466862  T
Q  201 tctgattttcacttcattcttgttcaaatactgtagacgatttaagcagattcactttatacca 264  Q
    ||||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||| ||||||    
T  26466861 tctgattttcacttcattcttgtccaaattctgcagacgaattaagcagattcacttgatacca 26466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 326 - 508
Target Start/End: Complemental strand, 26466736 - 26466555
Alignment:
Q  326 gtatatatattccagtggattgtttggttgaagagtacccgagttaaaatcagtcatgttaagagcaaatcatagaaaataatggtttatgaagctctta 425  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |    
T  26466736 gtatatatattccagtagattgtttggttgaagagtacctgagttaaaatcagtcatgttaagcgcaaatcatagaaaataatggtttatgaagcacaaa 26466637  T
Q  426 cacgtacaccaaacactgcacctataggtcgacgccaataataatttgagataataagataattcaatgtaatcttgtatgtc 508  Q
    |||| |||||||||||  |||  | | | | || || |||||||||||||| ||||||||||||||||| |||| | ||||||    
T  26466636 cacggacaccaaacacgacacacacacg-ccacaccgataataatttgagaaaataagataattcaatgcaatcatatatgtc 26466555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 499
Target Start/End: Complemental strand, 37225798 - 37225759
Alignment:
Q  460 ccaataataatttgagataataagataattcaatgtaatc 499  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  37225798 ccaataataatttgagaaaataacataattcaatgtaatc 37225759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 497
Target Start/End: Original strand, 14227226 - 14227263
Alignment:
Q  460 ccaataataatttgagataataagataattcaatgtaa 497  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  14227226 ccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 499
Target Start/End: Original strand, 3508059 - 3508095
Alignment:
Q  463 ataataatttgagataataagataattcaatgtaatc 499  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatc 3508095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 14370783 - 14370710
Alignment:
Q  128 ttattgttattattattctctgttttttcttgattattcattttgatgtaatggaa-ttggattattttattatt 201  Q
    ||||| ||||||||||||| | ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  14370783 ttatttttattattattcttt-ttttttctttattattcattttgatgaaatggaatttggattattttattatt 14370710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14370868 - 14370815
Alignment:
Q  1 ttctctcctctgctctcgctatggcgttcatcatcgaatctgcttggcaggttc 54  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||    
T  14370868 ttctctcctatcctctcgctatgccgttcatcatcgaatctgcatggcaggttc 14370815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 14370816 - 14370774
Alignment:
Q  70 tctctttcttatttccaaattattacatgcattttatttttat 112  Q
    |||||| ||||||||||||| | ||||||||||||||||||||    
T  14370816 tctcttccttatttccaaatcactacatgcattttatttttat 14370774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 44605197 - 44605156
Alignment:
Q  457 acgccaataataatttgagataataagataattcaatgtaat 498  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  44605197 acgccaataataatttgagaaaataacataattcaatgtaat 44605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 40783954 - 40783992
Alignment:
Q  453 gtcgacgccaataataatttgagataataagataattca 491  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  40783954 gtcgacgccgataataatttgagataataacataattca 40783992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 499
Target Start/End: Complemental strand, 240073 - 240037
Alignment:
Q  463 ataataatttgagataataagataattcaatgtaatc 499  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatc 240037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 499
Target Start/End: Complemental strand, 18607149 - 18607113
Alignment:
Q  463 ataataatttgagataataagataattcaatgtaatc 499  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18607149 ataataatttgagaaaataacataattcaatgtaatc 18607113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 500
Target Start/End: Complemental strand, 2471264 - 2471228
Alignment:
Q  464 taataatttgagataataagataattcaatgtaatct 500  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  2471264 taataatttgagaaaatgagataattcaatgtaatct 2471228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 499
Target Start/End: Complemental strand, 17080941 - 17080897
Alignment:
Q  455 cgacgccaataataatttgagataataagataattcaatgtaatc 499  Q
    |||| ||||||||||||||||| ||||| |||||| |||||||||    
T  17080941 cgacaccaataataatttgagaaaataacataattgaatgtaatc 17080897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University