View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_16 (Length: 516)
Name: NF19631_high_16
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 35921908 - 35922401
Alignment:
| Q |
6 |
gatggacatcatcatattatcaagagtaaagttcaaatgatgtcaatgaccaggtttttgcatgtgattttataaatcaaaagaaaaataaagttcaata |
105 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921908 |
gatggtcataatcatattatcaagagtaaagttcaaatgatgtcaatgaacaggtttttgcatgtgattttataaatcaaaagaaaaataaagttcaata |
35922007 |
T |
|
| Q |
106 |
tcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtcatcaatcaagtataattaataatctatttat |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922008 |
tcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtcatcaatcaagtataattaataatctatttat |
35922107 |
T |
|
| Q |
206 |
aaacaaatattaaatagacaatgacacattaaagaacatnnnnnnntagaaaatgcatacaaaagaacaaaagttaactgaagaaaacagtttctgatgc |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35922108 |
aaacaaatattaaatagacaatgacacattaaagaacataaaaaaatagaaaatgcatacaaaagaacaaaagttaactgtagaaaacagtttctgatgc |
35922207 |
T |
|
| Q |
306 |
a--ttttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcagga |
403 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922208 |
attttttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcagga |
35922307 |
T |
|
| Q |
404 |
tcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922308 |
tcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
35922401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 252 - 481
Target Start/End: Original strand, 35911500 - 35911729
Alignment:
| Q |
252 |
tagaaaatgcatacaaaagaacaaaagttaactgaagaaaacagtttctgatgcattttttacctccattaagccacaatattaagggtttagtataaga |
351 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||| |||| ||| |||||||| |||| |
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|
| T |
35911500 |
tagaaaatgcctacaaaagaacaaaagttaactgtgaaaaacagtttctaatgcaatttttacctccattgagccataatactaaaggtttagtggaaga |
35911599 |
T |
|
| Q |
352 |
gttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggt |
451 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
35911600 |
gttatatggagactccacaaaataatagaaaagttctctaccagcctcaggatcaactgtgacatagcctgaatattggtcaaaatttaccccatagggt |
35911699 |
T |
|
| Q |
452 |
tgaccaggcaatgtgacgatcttgtcagct |
481 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
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|
| T |
35911700 |
tgaccaggcaatgtgtcaatcttgtcagct |
35911729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 308 - 497
Target Start/End: Original strand, 35941077 - 35941266
Alignment:
| Q |
308 |
tttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaa |
407 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35941077 |
tttttacctccattgagccataatactaaaggtttagtagaagagttacatggagactccacaaaataatagaaaagttctcttccagtctcaggatcaa |
35941176 |
T |
|
| Q |
408 |
ctgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35941177 |
ctgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
35941266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 309 - 497
Target Start/End: Original strand, 35915944 - 35916132
Alignment:
| Q |
309 |
ttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaac |
408 |
Q |
| |
|
||||||||||||| | ||||| || ||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35915944 |
ttttacctccattgaaccacagtactaaaggtttagtggaagagttatatggagactccacaaaataatagaaaagttctcttccagcctcaggatcaac |
35916043 |
T |
|
| Q |
409 |
tgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
497 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35916044 |
tgtgacatagcctgaatattggtcaaaatttactccatagggttgaccaggcaatgtgacgatcttgtctgctagtcttagctcctctt |
35916132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 255 - 497
Target Start/End: Original strand, 35928839 - 35929079
Alignment:
| Q |
255 |
aaaatgcatacaaaagaacaaaagttaactgaagaaaacagtttctgatgcattttttacctccattaagccacaatattaagggtttagtataagagtt |
354 |
Q |
| |
|
||||||||||||||| ||||||||||| | | | |||| ||||| || ||| ||| |||||||||| |||||||| | ||| |||||||| ||||||| |
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|
| T |
35928839 |
aaaatgcatacaaaataacaaaagttatcagcataaaaaagttt--gaggcaatttatacctccattgagccacaaaactaaaggtttagtggaagagtt |
35928936 |
T |
|
| Q |
355 |
atgtggagattccacaaaataatagaaaagttctcttccagcctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttga |
454 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35928937 |
atatggagactccacaaaataatagaaaagctctcttccagcctcaggattaacagtgacatagcctgaatattggtcaaaattcactccatatggttga |
35929036 |
T |
|
| Q |
455 |
ccaggcaatgtgacgatcttgtcagctagtcttagctcctctt |
497 |
Q |
| |
|
|||||||||||| | |||||||||||| | |||||| |||||| |
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| T |
35929037 |
ccaggcaatgtgtcaatcttgtcagcttgccttagcccctctt |
35929079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 289 - 497
Target Start/End: Original strand, 35935508 - 35935716
Alignment:
| Q |
289 |
aaaacagtttctgatgcattttttacctccattaagccacaatattaagggtttagtataagagttatgtggagattccacaaaataatagaaaagttct |
388 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| |||||||||| ||| |||||||| ||||||||| |||||| |||||||||||||| |||||| || |
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|
| T |
35935508 |
aaaacagtttgtgaggctatttttacctccattgagccacaatactaatggtttagttgaagagttatatggagactccacaaaataataaaaaagtgct |
35935607 |
T |
|
| Q |
389 |
cttccagcctcaggatcaactgtgacatagcctgaatattggtcaaaattcactccatagggttgaccaggcaatgtgacgatcttgtcagctagtctta |
488 |
Q |
| |
|
||||| |||||||| ||||| || ||||| || || ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35935608 |
cttccggcctcaggttcaacagtcacataaccagagtattggtcaaaatctacaccatcgggttgaccaggcaatgtgacgatcttgtcagctagtctta |
35935707 |
T |
|
| Q |
489 |
gctcctctt |
497 |
Q |
| |
|
||||||||| |
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|
| T |
35935708 |
gctcctctt |
35935716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 35911133 - 35911260
Alignment:
| Q |
81 |
atcaaaagaaaaataaagttcaatatcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtcatcaat |
180 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| |||||| |||||||| |||||| ||||| ||||| ||||||||||||||||||||||| |
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|
| T |
35911133 |
atcaaaagaaaaataatattcaatatcaagtgatgtttgtctttaggttaaactatattatcat-tttcagtactacgaaaatgaacttatgtcatcaat |
35911231 |
T |
|
| Q |
181 |
caagtataattaataatctatttataaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35911232 |
caagtataattaataatctatttataaac |
35911260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 35915620 - 35915749
Alignment:
| Q |
76 |
tataaatcaaaagaaaaataaagttcaatatcaagtgatatttgttcttaggtaaaactatactatcatgtttcactactatgaaaatgaacttatgtca |
175 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||||||||||||| | |||||| |||||||| ||| |||||||||||||||||||| | |||||||| |
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|
| T |
35915620 |
tatatatcaaaagaaaaataatattcaaaatcaagtgatatttttctttaggttaaactatattat---gtttcactactatgaaaatgtagttatgtca |
35915716 |
T |
|
| Q |
176 |
tcaatcaagtataattaataatctatttataaa |
208 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| |
|
|
| T |
35915717 |
tcaatcaaatataactaataatctatatataaa |
35915749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 35928659 - 35928700
Alignment:
| Q |
142 |
catgtttcactactatgaaaatgaacttatgtcatcaatcaa |
183 |
Q |
| |
|
||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
35928659 |
catgtttgactactatgaaaatcaagttatgtcatcaatcaa |
35928700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 35915873 - 35915901
Alignment:
| Q |
255 |
aaaatgcatacaaaagaacaaaagttaac |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35915873 |
aaaatgcatacaaaagaacaaaagttaac |
35915901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 35935217 - 35935257
Alignment:
| Q |
143 |
atgtttcactactatgaaaatgaacttatgtcatcaatcaa |
183 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
35935217 |
atgtttcactactatgaaaatgaagttatgttatcgatcaa |
35935257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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