View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_high_18 (Length: 497)
Name: NF19631_high_18
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 42307217 - 42306732
Alignment:
| Q |
1 |
ccttctgagaatctatttttacttttagtggaatttcaatcaaatcggttatataaattacacatcttatcttaccataaattgtgtgagtgtgtgtgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307217 |
ccttctgagaatctatttttacttttagtggaatttcaatcaaatcggttatataaattacacatcttatcttaccataaattgtgtgagtgtgtgtgag |
42307118 |
T |
|
| Q |
101 |
ttaatgagcgttttgaaaccattgatggtattttgttttacgttattataatgatacttggtaattataggcaaaggcagtatcatcataattaaagttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307117 |
ctaatgagcgttttgaaaccattgatggtattttgttttacgttattataatgatacttggtaattataggcaaaggcagtatcatcataattaaagttc |
42307018 |
T |
|
| Q |
201 |
ttattttcttgccaaattcaggatataagcatgannnnnnnncgttttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42307017 |
ttattttcttgccaaattcaggatataagcatgattttttttcgttttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgag |
42306918 |
T |
|
| Q |
301 |
tggcataacgtgaacatcatagttgacacatggaattttggatgtgcctaacttccttataggaatcaaatgtcaattagctggtcatggggttaccttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306917 |
tggcataacgtgaacatcatagttgacacatggaattttggatgtgcctaacttccttataggaatcaaatgtcaattagctggtcatggggttaccttt |
42306818 |
T |
|
| Q |
401 |
ggtgtagcttgttcatttctctttctattatgtatgtccatgactttgcttgtatcaatctttgataccttagctttaggattcat |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306817 |
ggtgtagcttgttcatttctctttctattatgtatgtccatgactttgcttgtatcaatctttgataccttagctttaggattcat |
42306732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 204 - 401
Target Start/End: Complemental strand, 16935946 - 16935751
Alignment:
| Q |
204 |
ttttcttgccaaattcaggatataagcatgannnnnnnncgttttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgaatgg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16935946 |
ttttcttgccaaattcaggatataagcatgattttt---cttcttggaggggatgggttggggccaggtagcttccaatcccctcatggattatgagtgg |
16935850 |
T |
|
| Q |
304 |
cataacgtgaacatcatagttgacacatggaattttggatgtgcctaacttccttataggaatcaaa-tgtcaattagctggtcatggggttacctttg |
401 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| | ||| |||||||||||||||||||||||||| |||| |
|
|
| T |
16935849 |
cataacgtgaacatcatggttgacacatggaattttggatgtgcctaatttccttatgggactgaaattgtcaattagctggtcatggggttacatttg |
16935751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 486
Target Start/End: Complemental strand, 16935754 - 16935713
Alignment:
| Q |
445 |
tttgcttgtatcaatctttgataccttagctttaggattcat |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16935754 |
tttgcttgtatcaatctttgataccttagctttaggattcat |
16935713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University