View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_21 (Length: 481)
Name: NF19631_high_21
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 10707053 - 10707498
Alignment:
| Q |
18 |
gtttatggtacatagatgaacgaagatttttcacacagcaaatcagacagataatgggatatttctctggcttccaacgtttggttttaaatcccatgat |
117 |
Q |
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| T |
10707053 |
gtttatggtacatagatgaacgaagatttttcacacagcaaatcagacagataatgggatatttctctggcttccaacgtttggttttaaatcccatgat |
10707152 |
T |
|
| Q |
118 |
agcacatgctactcctcctcaggaaggataaatggcaaagaaatctctcggatcatcaagtcaccgcaaaatgggcattcactagctatagcatcatcta |
217 |
Q |
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| T |
10707153 |
agcacatgctgctcctcctcaggaaggataaatggcaaagaaatctctcggatcatcaagtcaccgcaaaatgggcattcactagctatagcatcatcta |
10707252 |
T |
|
| Q |
218 |
gttgcgatcggagctgccatcaatttgtgacgtgttataaattcgtgaagcatcagcatttaacaccacatttcatgcttaattaacttgtaatactgag |
317 |
Q |
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| T |
10707253 |
gttgcgatcggagctgccatcaatttgtgacgtgttataaattcgtgaagcatcagcatttaacaccacatttcatgcttaattaacttgtaatactgag |
10707352 |
T |
|
| Q |
318 |
aggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcacatgcatgaaaataagttcagaacaaaccttatc |
417 |
Q |
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| T |
10707353 |
aggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcacatgcatgaaaataagttcagaacaaaccttatc |
10707452 |
T |
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| Q |
418 |
tacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
463 |
Q |
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| T |
10707453 |
tacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
10707498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 26651886 - 26651439
Alignment:
| Q |
18 |
gtttatggtacatagatgaacgaagatttttcacacagcaaatcagacagataatgggatatttctctggcttccaacgtttggttttaaatcccatgat |
117 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26651886 |
gtttatggtacatagatgaacaaagatttttcacacagcaaatcagacagataatgggatatttctctggcttccaacgtttggttttaaatcccatgat |
26651787 |
T |
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| Q |
118 |
agcacatgctactcctcctcaggaaggataaatggcaaagaaatctctcggatcatcaagtcaccgcaaaatgggcattcactagctatagcatcatcta |
217 |
Q |
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| T |
26651786 |
agcacatgctgctcctcgtcaggaaggataaatggcaaagaaatctctcggatcatcaagtcaccgcaaaatgggcattcactagctatagcatcatcta |
26651687 |
T |
|
| Q |
218 |
gttgcgatcggagctgccatcaatttgtgacgtgttataaattcgtgaagcatcagcatttaacaccacatttcatgcttaattaacttgtaatactgag |
317 |
Q |
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| T |
26651686 |
gttgcgatcggagctgccatcaatttgtgacgtgttataaattcatgaagcatcagcatttaacaccacatttcatgcttaattaacttgtaatactgag |
26651587 |
T |
|
| Q |
318 |
aggtaaaataaatttgcagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcac--atgcatgaaaataagttcagaacaaacctta |
415 |
Q |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
26651586 |
aagtaaaataaatttgaagctaaaacttcaatgcaggtaaaatgcagtacagagtgataaaagtcactgatgcatgaaattaagttcagaacaaacctta |
26651487 |
T |
|
| Q |
416 |
tctacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26651486 |
tctacagaggtcgtgctaggaatggacccctctgaagcaagattgcca |
26651439 |
T |
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