View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_22 (Length: 473)
Name: NF19631_high_22
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 21571256 - 21570816
Alignment:
| Q |
15 |
agatgaaaagaatttggagtggattaaaggaattagaaaagggggaagaaagttggtatggtggtaaagaaaaagcaaagcataaaataatgctcttcat |
114 |
Q |
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| T |
21571256 |
agatgaaaagaatttggagtggattaaaggaattagaaaagggggaagaaagttggtatggtggtaaagaaaaagcaaagcataaaataatgctcttcat |
21571157 |
T |
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| Q |
115 |
gaaaaattgacaatgacacatgaagaatcatccagaaactctctaaaaaacatgtactagataattgaaattaaaacaaaacaaaggaatataaaacgtt |
214 |
Q |
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| T |
21571156 |
gaaaaattgacaatgacacatgaagaatcatccagaaactctctaagaaacatgtactagataattgaaattaaaactaaacaaaggaatataaaacgta |
21571057 |
T |
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| Q |
215 |
ataaagtgattgttggcaaaggagaaagaagaaaaattcaaaaggaaaagaataatattttgcaatcattttgtactgaaaccgacccatgaatgtatct |
314 |
Q |
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| T |
21571056 |
ataaagtgattgttggcaaaggagaaagaagaaaaattcaaaaggaaaagaataacgttttgcaatcattttgtactgaaaccgacccatgaatgtatct |
21570957 |
T |
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| Q |
315 |
tcctataaatgggaagctaaatttggtggaaaattgtcctttgatatatgatatgtgtggattataaaagttgagattcttaatgcactatggcgtaatg |
414 |
Q |
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| T |
21570956 |
tcctaaaaatgggaagctaaatttggtcgaaaattgtcctttgatatatgatatgtgtggattataatagttgagattcttaatgcactatggcgtaatg |
21570857 |
T |
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| Q |
415 |
aatatctcattaatccatgttgacacaaaatcatggtatgc |
455 |
Q |
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| T |
21570856 |
aatatctcattaatccgtgtagacccaaaatcatggtatgc |
21570816 |
T |
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