View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_23 (Length: 463)
Name: NF19631_high_23
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 15676364 - 15675926
Alignment:
| Q |
18 |
ttatatggatcaactatctcttacttttcctcccaaattaatttttgttt--ggtcaaggggctactttgtttcgatcgatccttttccaa-ttcgtttt |
114 |
Q |
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| T |
15676364 |
ttatatggatcaactatcttttacttttcctcccaaataattttttttttctggtcaaggggctacttttttaggatcgatccttttccaaattcgtttt |
15676265 |
T |
|
| Q |
115 |
gggttcatctctctatgacaaaaggagctataa-------gtgtatgtctagtgcccaattgaaaggcacatatccttaccttatatatggagtgcctct |
207 |
Q |
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|||||||||||| |||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
15676264 |
gggttcatctctttatgacaaaaggtggtataacttataagtgtatgtctagtgcccaattaaaaggcacatatccttaccttatacatggagtgcctct |
15676165 |
T |
|
| Q |
208 |
gacatttgataaataaaaagggaagcacaaatatcagccttccttcatctttttagctgagtggagattttgtccgtttggcactttgattcttttgttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
15676164 |
gacatttgataaataaaaagggaagcacaaatatcagccttccttcatatttttagctgagtggagattttgtccgtttggcattttgattcttttggtg |
15676065 |
T |
|
| Q |
308 |
ctaaggtaatgcagtggttttgatgatcattccaagaaactaaaatccaaaaagaagatgctacactcccacacttctaagtttgaaagcgatcatattc |
407 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15676064 |
ctaatgtaatgcagtggttttgatgatcattccaagaaactaaaatccaaaaagaagatgctatactcccacacttctaagtttgaaagcgatcatattc |
15675965 |
T |
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| Q |
408 |
gagagttattatacaaaaaggatttgtttaccctaaaat |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
15675964 |
gagagttattatacaaaaaggatttgtttaccctaaaat |
15675926 |
T |
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