View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_26 (Length: 446)
Name: NF19631_high_26
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 429
Target Start/End: Complemental strand, 4242484 - 4242071
Alignment:
| Q |
16 |
ataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacaaatttcnnnnnnnnnnnnnnnggtatggttgatggatatta |
115 |
Q |
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| T |
4242484 |
ataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacgaatttcagaagaaaaaaaaaaggtatggttgatggatatta |
4242385 |
T |
|
| Q |
116 |
tgaggaccaagaatcattgcgttgaatatttcaaattgactagtgttgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgt |
215 |
Q |
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| T |
4242384 |
tgaggaccaagaatcattgtgttgaatatctcaaattgactagtgatgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagatacatgtgt |
4242285 |
T |
|
| Q |
216 |
gctgagaaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242284 |
gctgagaaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttcttttgtgg |
4242185 |
T |
|
| Q |
316 |
tttgtgcgttaaatgaatgtttacgtatcaatggtcatgaatctctgctctacatgacctgtttacgtatcttttgttggctaattcgtgtgtttacatt |
415 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4242184 |
tttgtgcgttaaatgaatgtttacatatcaatgctcatgaatctctgctctacatgacctgtttacatatcttttgttggctaattcgtgtgtttacatt |
4242085 |
T |
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| Q |
416 |
ggcttatcagtttg |
429 |
Q |
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| T |
4242084 |
ggcttatcagtttg |
4242071 |
T |
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