View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_31 (Length: 429)
Name: NF19631_high_31
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 1968231 - 1967858
Alignment:
| Q |
17 |
aaacctaaacctaaatcaagaacatgaagatcaacatgtcaatatatcaaaaccttcaccatccaaaccaaataagggtaagttccaaaaatgatcacat |
116 |
Q |
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| T |
1968231 |
aaacctaaacctaaatcaagaacatgaagatcaacatgtcaatatatcaaaaccttcaccatccaaaccaaataagggtaagttccaaaaatgatcacat |
1968132 |
T |
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| Q |
117 |
tcatatgctggtttgattttgttaatcctcaatttctttgatatgtttgcatcaatttatcattaaacaaaatttgtata-nnnnnnnngttgagattga |
215 |
Q |
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| T |
1968131 |
tcatatgttggtttgattttgttaatcctcaatttctttgatatgtttgcatcaatttatcattaaacaaagtttgtatatttttttttgttgagattga |
1968032 |
T |
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| Q |
216 |
ttaaattatgttaattgaccaagccaaattctagctcaaaatattaaggagaaaaaataggttggacattgtattatcattgcgaattattgacaatttc |
315 |
Q |
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| T |
1968031 |
ttaaattatgttaattgacctagccaaattctagctcaaaatattaaggagaaaaaataggtttgacattgtattatcattgcgaattattgacaatttc |
1967932 |
T |
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| Q |
316 |
tgtctcnnnnnnngttacgtcacatcactcaaaccacgtaaatatgtgtgtattcttctttctatttctccaata |
390 |
Q |
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| T |
1967931 |
tgtct-tttttttgttatgtcacatcactcaaaccacgaaaatatgtgtgaattcatctttcgatttctccaata |
1967858 |
T |
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