View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_high_46 (Length: 368)
Name: NF19631_high_46
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_46 |
 | |
|
| [»] scaffold1476 (2 HSPs) |
| | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 38)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 5398226 - 5398459
Alignment:
| Q |
11 |
atgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagt |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5398226 |
atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt |
5398325 |
T |
|
| Q |
111 |
ttatcttgtatatgatttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttc |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
5398326 |
ttatcttgtatatgatttgaatgcaattgcttgta---atgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttc |
5398422 |
T |
|
| Q |
211 |
aatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
5398423 |
aatcagaaaagaaagaagaaaagccgagttgaatgaa |
5398459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 5439189 - 5439479
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||| || |
|
|
| T |
5439189 |
agatgaggaggggcagaggttaaaatcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagca |
5439288 |
T |
|
| Q |
109 |
gtttatcttgtatatgat---------ttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtcca |
199 |
Q |
| |
|
| |||||| ||||||||| |||||| | || || |||| ||||||||| |||||||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
5439289 |
gcttatctcgtatatgatgcacaaaatttgaatgccgttgctagtagatgtgatgaaaatgaacgccctgctaagagattctctactggagaggagccca |
5439388 |
T |
|
| Q |
200 |
gtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaaagattgtaaaacaatggccgagcaaaaatcaattcttatggtg |
290 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
5439389 |
ctgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaaaaatggtaaaacaatggcttggtaaacatcaattcttatggtg |
5439479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 336
Target Start/End: Original strand, 5351703 - 5351872
Alignment:
| Q |
167 |
ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaaagattgtaaaacaatggcc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||| || | || |||||||| ||||| ||||||| |
|
|
| T |
5351703 |
ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtggattgaaagatagtaaagcaatggcg |
5351802 |
T |
|
| Q |
267 |
gagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
5351803 |
gagcaaaaatcaatt-ttatggtgacggctaacaattgttttccatttttggctgtagtttcttgatttta |
5351872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 5156130 - 5156017
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
5156130 |
agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaaca |
5156031 |
T |
|
| Q |
109 |
gtttatcttgtata |
122 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5156030 |
gtttatcttgtata |
5156017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 5372275 - 5372388
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
5372275 |
agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaaca |
5372374 |
T |
|
| Q |
109 |
gtttatcttgtata |
122 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
5372375 |
atttatctcgtata |
5372388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 5135911 - 5135751
Alignment:
| Q |
167 |
ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatga--------aagattgtaaaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| | |||||| ||||| ||||| |
|
|
| T |
5135911 |
ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatggaagatagtaaag |
5135812 |
T |
|
| Q |
259 |
caatggccgagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggct |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
5135811 |
caatggccgagcaaaaatcaatt-ttatgatgactgctaacaattgttttccatttttggct |
5135751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5177917 - 5178034
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
5177917 |
agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca |
5178016 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
5178017 |
gtttatctcgtatatgat |
5178034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5279742 - 5279859
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
5279742 |
agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca |
5279841 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
5279842 |
gtttatctcgtatatgat |
5279859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5689020 - 5688903
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
5689020 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaaca |
5688921 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
5688920 |
gtttatctcgtatatgat |
5688903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 2939094 - 2939210
Alignment:
| Q |
10 |
gatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacag |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||| ||||| |
|
|
| T |
2939094 |
gatgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaa |
2939193 |
T |
|
| Q |
110 |
tttatcttgtatatgat |
126 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
2939194 |
tttatctcgtatatgat |
2939210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 5100810 - 5100650
Alignment:
| Q |
167 |
ctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcga--------attgaatgaaagattgtaaaa |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| | | |||||||||| |||| |
|
|
| T |
5100810 |
ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaatg |
5100711 |
T |
|
| Q |
259 |
caatggccgagcaaaaatcaattcttatggtgaccgctaacaattg-tttccatttttggct |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
5100710 |
caatggccgagcaaaaatcaatt-ttatgatgactgctaacaattgttttccatttttggct |
5100650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 5180891 - 5180644
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
5180891 |
agatgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagca |
5180792 |
T |
|
| Q |
109 |
gtttatcttgtatat---------gatttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtcca |
199 |
Q |
| |
|
||||||| |||||| ||||||||| ||| ||||||| | |||||||| ||| || |||| |||||||||||| ||||||| || | |
|
|
| T |
5180791 |
atttatctggtatatgatgcacaagatttgaatctcattgcttgtagaggtgatgaaactgaatgctctgtgaagagattctctgctgaagacgaacacg |
5180692 |
T |
|
| Q |
200 |
gtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
5180691 |
ccgacgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa |
5180644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5351578 - 5351695
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||||||||| |||||| | |
|
|
| T |
5351578 |
agatgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagta |
5351677 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
5351678 |
gtttatctcgtatatgat |
5351695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 5352803 - 5352691
Alignment:
| Q |
144 |
tagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaa |
243 |
Q |
| |
|
||||||||||||||| || | |||||||||||||||||||| |||||||||| || ||| || ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5352803 |
tagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaa |
5352704 |
T |
|
| Q |
244 |
tgaaagattgtaa |
256 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
5352703 |
tgaaagatggtaa |
5352691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 5334363 - 5334457
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaaga |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5334363 |
agatgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaaga |
5334457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 5242621 - 5242512
Alignment:
| Q |
17 |
aggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatct |
116 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5242621 |
aggggctgagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatct |
5242522 |
T |
|
| Q |
117 |
tgtatatgat |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
5242521 |
cgtatatgat |
5242512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5346207 - 5346324
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
5346207 |
agatgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagca |
5346306 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
5346307 |
atttatctcatatatgat |
5346324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 5256220 - 5255984
Alignment:
| Q |
20 |
ggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgt |
119 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| | || |
|
|
| T |
5256220 |
ggcagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggt |
5256121 |
T |
|
| Q |
120 |
atatg---------atttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttc |
210 |
Q |
| |
|
||||| |||||||| ||| ||||||| |||||||| ||| | ||| |||| || ||||||||||||||| ||| |||||| ||| |
|
|
| T |
5256120 |
atatgatgcacaaaatttgaatcacattgcttgtagccgtgatgaaagtgaatggtctgaagagagtttttctactgaagaggagcccactgatgatttc |
5256021 |
T |
|
| Q |
211 |
aatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
5256020 |
aatcagaacagaaagaagaaaaaccgagtggaatgaa |
5255984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5098389 - 5098506
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcatt-ttgtttttgagaatgatttcattgtgaagaagacaac |
107 |
Q |
| |
|
|||||| ||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||| |||||| | |
|
|
| T |
5098389 |
agatgaggagagccagagggtaatatcaagtatagaacctggtaacaaagtggagg-tcattgttgttttcgagaacagtttcattgtgaaaaagacagc |
5098487 |
T |
|
| Q |
108 |
agtttatcttgtatatgat |
126 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5098488 |
agtttatctggtatatgat |
5098506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 23127407 - 23127310
Alignment:
| Q |
29 |
tagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat |
126 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| | | ||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
23127407 |
tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgat |
23127310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 5448794 - 5449022
Alignment:
| Q |
16 |
gaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || |||||||||||| | ||||||||| ||||||||||||| |||| |||||||| ||| |||| |
|
|
| T |
5448794 |
gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc |
5448893 |
T |
|
| Q |
116 |
ttgtatat---------gatttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatga |
206 |
Q |
| |
|
| |||||| ||||| || ||| ||||||| | ||||||||| ||| || || | |||| |||||||||||||| || || ||||| |
|
|
| T |
5448894 |
tggtatatgatgcacaagattttaacgtcattgcttgtagaggtgatgaaaatgaatgctctctaaagaacttctctactgaagacgatcccgcagatga |
5448993 |
T |
|
| Q |
207 |
cttcaatcagaacagaaagaagaaaaatc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5448994 |
cttcaatcagaacagaaagaagaaaaatc |
5449022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 5100920 - 5100822
Alignment:
| Q |
24 |
gagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
5100920 |
gagggtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtata |
5100822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 5136021 - 5135923
Alignment:
| Q |
24 |
gagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
5136021 |
gagggtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtata |
5135923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5065566 - 5065449
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||||||| || |||||||| || | ||||||||||||| | |||| ||||||||| ||||||| |
|
|
| T |
5065566 |
agatgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaaca |
5065467 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
5065466 |
gtttatctcatatatgat |
5065449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5126746 - 5126629
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||| ||||||||||||| ||| || | |||||||| |||| | ||||||||||||||||||| | |
|
|
| T |
5126746 |
agatgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagct |
5126647 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
5126646 |
gtttatctcatatatgat |
5126629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5352980 - 5352863
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| || |||||| ||||||| ||||| | ||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
5352980 |
agatgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaaca |
5352881 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
5352880 |
atttatctggtatatgat |
5352863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5427078 - 5427195
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaaca |
108 |
Q |
| |
|
|||||| |||||| | || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||| ||||||| | |
|
|
| T |
5427078 |
agatgaggagggggaaagagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagta |
5427177 |
T |
|
| Q |
109 |
gtttatcttgtatatgat |
126 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
5427178 |
gtttatctcgtatatgat |
5427195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 5283330 - 5283224
Alignment:
| Q |
20 |
ggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcat-tttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttg |
118 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||||||||||||| |||| ||||||||||| || ||||||||||||||||||| || ||||||| | |
|
|
| T |
5283330 |
ggcagagggtaatatcaagtatcgaaccaggtaacaaagtggagg-tcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctgg |
5283232 |
T |
|
| Q |
119 |
tatatgat |
126 |
Q |
| |
|
|||||||| |
|
|
| T |
5283231 |
tatatgat |
5283224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 5155973 - 5155866
Alignment:
| Q |
124 |
gatttgaatacaattacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaa |
223 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||| |||| | ||||||||||||| || |||||| ||| ||| |||||||| |||||| ||||||| |
|
|
| T |
5155973 |
gatttgaatgcaatttcttgtagtaatgatgaaaatgaactctctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaa |
5155874 |
T |
|
| Q |
224 |
agaagaaa |
231 |
Q |
| |
|
|||||||| |
|
|
| T |
5155873 |
agaagaaa |
5155866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 5242459 - 5242360
Alignment:
| Q |
136 |
attacttgtagtgatgatgaaaaagaacgccctgtcaagagattctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatc |
235 |
Q |
| |
|
||||||| ||| | ||||||| | |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
5242459 |
attacttatagaggtgatgaagatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatc |
5242362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 5072779 - 5072692
Alignment:
| Q |
29 |
tagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatct |
116 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||| ||||| ||||||| |||||||||||||| ||||||| | ||||||| |
|
|
| T |
5072779 |
tagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatct |
5072692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
| Q |
16 |
gaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatc |
115 |
Q |
| |
|
|||||||| || ||| ||| |||||| |||||||| || ||||||||| || | ||||||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
5253718 |
gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc |
5253817 |
T |
|
| Q |
116 |
ttgtatatga |
125 |
Q |
| |
|
| ||||||| |
|
|
| T |
5253818 |
tcatatatga |
5253827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 2657210 - 2657155
Alignment:
| Q |
67 |
cattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtata |
122 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
2657210 |
cattttgtattcgagaatgatttcattgtgaagaaggcaacaatttatctcgtata |
2657155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 5124553 - 5124443
Alignment:
| Q |
16 |
gaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatc |
115 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||||| |||||||| || |||||||||| |||| |||||||||||| |||||||| | ||| |
|
|
| T |
5124553 |
gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata |
5124454 |
T |
|
| Q |
116 |
ttgtatatgat |
126 |
Q |
| |
|
|| |||||||| |
|
|
| T |
5124453 |
ttatatatgat |
5124443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 5255930 - 5255890
Alignment:
| Q |
297 |
aacaattgttt-ccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5255930 |
aacaattgttttccatttttggctgaagtttctagatttta |
5255890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 336
Target Start/End: Original strand, 5334562 - 5334593
Alignment:
| Q |
305 |
tttccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5334562 |
tttccatttttggctgaagtttctagatttta |
5334593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 5334453 - 5334498
Alignment:
| Q |
187 |
gaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaa |
232 |
Q |
| |
|
||||| ||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5334453 |
gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaa |
5334498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 5283153 - 5283109
Alignment:
| Q |
203 |
atgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
5283153 |
atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaa |
5283109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 47985511 - 47985393
Alignment:
| Q |
8 |
gagatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaac |
107 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| || | | |
|
|
| T |
47985511 |
gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
47985412 |
T |
|
| Q |
108 |
agtttatcttgtatatgat |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47985411 |
agtttatcttgtatatgat |
47985393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 48004085 - 48003967
Alignment:
| Q |
8 |
gagatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaac |
107 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| || | | |
|
|
| T |
48004085 |
gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
48003986 |
T |
|
| Q |
108 |
agtttatcttgtatatgat |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48003985 |
agtttatcttgtatatgat |
48003967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 47994798 - 47994680
Alignment:
| Q |
8 |
gagatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaac |
107 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| |||||||||||||| || | | |
|
|
| T |
47994798 |
gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
47994699 |
T |
|
| Q |
108 |
agtttatcttgtatatgat |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47994698 |
agtttatcttgtatatgat |
47994680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 48013370 - 48013252
Alignment:
| Q |
8 |
gagatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaac |
107 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||| | ||||||||||||||||| | ||||||||||||||| |||||||||||||| || | | |
|
|
| T |
48013370 |
gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
48013271 |
T |
|
| Q |
108 |
agtttatcttgtatatgat |
126 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48013270 |
agtttatcttgtatatgat |
48013252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 47985298 - 47985230
Alignment:
| Q |
179 |
tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| | ||||||| |
|
|
| T |
47985298 |
tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa |
47985230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 47994585 - 47994517
Alignment:
| Q |
179 |
tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| | ||||||| |
|
|
| T |
47994585 |
tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa |
47994517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 48003872 - 48003804
Alignment:
| Q |
179 |
tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| | ||||||| |
|
|
| T |
48003872 |
tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa |
48003804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 48013157 - 48013089
Alignment:
| Q |
179 |
tctctactgaagaggagtccagtgatgacttcaatcagaacagaaagaagaaaaatcgaattgaatgaa |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| | ||||||| |
|
|
| T |
48013157 |
tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaa |
48013089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 47985177 - 47985137
Alignment:
| Q |
297 |
aacaattgttt-ccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
47985177 |
aacaattgttttccaattttggctgaagtttctagatttta |
47985137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 47994464 - 47994424
Alignment:
| Q |
297 |
aacaattgttt-ccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
47994464 |
aacaattgttttccaattttggctgaagtttctagatttta |
47994424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 48003751 - 48003711
Alignment:
| Q |
297 |
aacaattgttt-ccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
48003751 |
aacaattgttttccaattttggctgaagtttctagatttta |
48003711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 48013036 - 48012996
Alignment:
| Q |
297 |
aacaattgttt-ccatttttggctgaagtttctagatttta |
336 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
48013036 |
aacaattgttttccaattttggctgaagtttctagatttta |
48012996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 36213038 - 36212942
Alignment:
| Q |
9 |
agatgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagaca |
105 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||| | ||| |||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
36213038 |
agatgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagaca |
36212942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 25569037 - 25569090
Alignment:
| Q |
28 |
gtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgag |
81 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
25569037 |
gtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgag |
25569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 4132730 - 4132618
Alignment:
| Q |
11 |
atgaagaggggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagt |
110 |
Q |
| |
|
|||| ||| ||||||| |||||||||| ||| ||||||||| ||||||| ||| || ||||||||| ||| ||||||||||| ||||||| |||| |
|
|
| T |
4132730 |
atgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattg---ttgtttttgggaacagtttcattgtgatgaagacagcagt |
4132634 |
T |
|
| Q |
111 |
ttatcttgtatatgat |
126 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4132633 |
ttatctcatatatgat |
4132618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 4122739 - 4122644
Alignment:
| Q |
31 |
gtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat |
126 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||| || | ||||||||| || ||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
4122739 |
gtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgat |
4122644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 7884261 - 7884155
Alignment:
| Q |
20 |
ggcagagggtagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgt |
119 |
Q |
| |
|
||||||| ||| |||||| |||||||||||| ||| || | |||| | |||||||| ||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
7884261 |
ggcagagagtaatatcaaatatagaacctggaaacgaaattaaggtggttgttgtttttacaaatgaattcattgtgaagaaaacaacaatttatcttgt |
7884162 |
T |
|
| Q |
120 |
atatgat |
126 |
Q |
| |
|
|||||| |
|
|
| T |
7884161 |
ctatgat |
7884155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 43 - 106
Alignment:
| Q |
32 |
tatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgt |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||||| |||||| |||||||||| |
|
|
| T |
43 |
tatcaagtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgt |
106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 189 - 228
Alignment:
| Q |
242 |
aatgaaagattgtaaaacaatggccgagcaaaaatcaatt |
281 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
189 |
aatgaaagatggtaaaacaatggcggagcaaaaatcaatt |
228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 22583396 - 22583333
Alignment:
| Q |
32 |
tatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgt |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||||| |||||| |||||||||| |
|
|
| T |
22583396 |
tatcaagtatagaacctggtaataaagtggaggttgctgttgtttatgagaacaatttcattgt |
22583333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
| Q |
29 |
tagtatcaagtatagaacctggtaacaaagtggaggttcattttgtttttgagaatgatttcattgtgaagaagacaacagtttatcttgtatatga |
125 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||| | ||||||||| | | | |||||||| ||| | |||||| |||||||| ||||||| |
|
|
| T |
7974 |
tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga |
7878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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