View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_high_47 (Length: 362)
Name: NF19631_high_47
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 17492252 - 17491902
Alignment:
| Q |
1 |
agctcatctcaaattgttggaatgttaatattagaggaacttgttttcttctaactttgttatgcatgatttcttgcttgcggaggaagttatcccaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17492252 |
agctcatctcaaattgttggaatgttaatattagaggaacttgttttctactaactttgttatgcatgatttcttgcttgcggaggaagtcatcccaacc |
17492153 |
T |
|
| Q |
101 |
cttattgaagatcatactaacaatctgctcactatggtttcttctagtgaagaagagatcaaggttgtagtgtttagcttgaatagtgatggattccctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17492152 |
cttattgaagatcatactaacaatctgctcactatggtttcttctagtgaagaagagatcaaggttgtagtgtttagcttgaatagtgatggatcccctg |
17492053 |
T |
|
| Q |
201 |
accctgatggatttggtgcctgcttctttcatacctattgggagattgttcaaaaagaggtcattgatgttgtgcttaaattctttcatactagctggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17492052 |
accctgatggatttggtgcctgcttctttcatacctattgggagattgttcaaaaagaggtcattgatgttgtgcttaaattctttcatactagctggtt |
17491953 |
T |
|
| Q |
301 |
acttccaaactacaatgccaattctcttattttgattccaatgtggatatt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17491952 |
acttccaaactacaatgccaattctcttattttgattccaatttggatatt |
17491902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 341
Target Start/End: Original strand, 17638853 - 17639043
Alignment:
| Q |
152 |
gaagagatcaaggttgtagtgtttagcttgaatagtgatggattccctgaccctgatggatttggtgcctg-cttctttcatacctattgggagattgtt |
250 |
Q |
| |
|
||||||||||| | | ||||||||| |||||| ||||||| ||||| ||||||||| ||||| ||||| || ||||| || || ||| |||||||| |
|
|
| T |
17638853 |
gaagagatcaaagctacagtgtttagtttgaatggtgatggggcccctggccctgatggctttggagcctgttttttttcacacatactggcagattgtt |
17638952 |
T |
|
| Q |
251 |
caaaaagaggtcattgatgttgtgcttaaattctttcatactagctggttacttccaaactacaatgccaattctcttattttgattccaa |
341 |
Q |
| |
|
|||||| | |||||||||||||| | ||||| |||| ||| ||||| |||||||| || ||||| || || || ||||||||||||| |
|
|
| T |
17638953 |
caaaaaaatgtcattgatgttgttcaagaattcattcaaactgagtggttgcttccaaattataatgctaactccctcattttgattccaa |
17639043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University