View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_high_59 (Length: 314)

Name: NF19631_high_59
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_high_59
NF19631_high_59
[»] chr7 (3 HSPs)
chr7 (4-87)||(44002529-44002612)
chr7 (236-298)||(44002438-44002500)
chr7 (14-73)||(3799401-3799458)
[»] chr8 (3 HSPs)
chr8 (13-166)||(12268451-12268603)
chr8 (13-108)||(7754835-7754928)
chr8 (13-110)||(37046624-37046719)
[»] chr1 (2 HSPs)
chr1 (13-110)||(8115612-8115707)
chr1 (4-110)||(50371509-50371613)
[»] chr4 (2 HSPs)
chr4 (4-166)||(9925478-9925639)
chr4 (121-166)||(10390085-10390130)
[»] chr5 (2 HSPs)
chr5 (4-110)||(17463218-17463322)
chr5 (48-99)||(4177569-4177620)
[»] chr2 (2 HSPs)
chr2 (13-110)||(26261664-26261759)
chr2 (13-99)||(24233409-24233497)
[»] chr3 (1 HSPs)
chr3 (64-110)||(29843449-29843495)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 44002612 - 44002529
Alignment:
Q  4 atgtcgaagaatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatg 87  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  44002612 atgttgaaaaatataattgctaattttgttatatatgttggacgttgaatgttgacaagttttggtatatgttgctaatatatg 44002529  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 44002500 - 44002438
Alignment:
Q  236 attataaatagccaacctctatcaaactaaaactaaaatgtatttttgcatgtacgtacctac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44002500 attataaatagccaacctctatcaaactaaaactaaaatgtatttttgcatgtacgtacctac 44002438  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 3799458 - 3799401
Alignment:
Q  14 atataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatat 73  Q
    |||||||||||| |||||||||||  |||||||||||||||||||| | |||||||||||    
T  3799458 atataattgctatttttgttatat--gttggacattgaatgttgacaaattttggtatat 3799401  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 12268603 - 12268451
Alignment:
Q  13 aatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca-n 111  Q
    |||||||||||||||||||||||||  | ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||| |      
T  12268603 aatataattgctaattttgttatat--gatggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaattttatgttctaaatt 12268506  T
Q  112 nnnnnnnaatcttcctctatacctcctaaattgcctcttgggattaaaaagtttt 166  Q
           | ||||||| ||| |||| ||||||||||||| |||||||||||||||    
T  12268505 tttttttagtcttcctttatgcctcttaaattgcctcttaggattaaaaagtttt 12268451  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 7754928 - 7754835
Alignment:
Q  13 aatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttcta 108  Q
    |||||||||||||||||||||| | |   ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||    
T  7754928 aatataattgctaattttgttacaaag--tggacgttgaatgttgacaaattttggtatatgttgctaatatatgcctcctaaatttcaggttcta 7754835  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 37046624 - 37046719
Alignment:
Q  13 aatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 110  Q
    ||||||||||||| |||||||||||  | | ||| |||||||||||| | ||||| ||||||||  |||||||| | |||||||||| ||||||||||    
T  37046624 aatataattgctacttttgttatat--gctagacgttgaatgttgacaaattttgatatatgtttttaatatattcttcctaaatttcaggttctaca 37046719  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 8115612 - 8115707
Alignment:
Q  13 aatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 110  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||| | |||||||||||||||||||||||||||| | |||||| ||||||||||    
T  8115612 aatataattgctaattttgttata--tgttggacgttgaatgttgacaaattttggtatatgttgctaatatatgccttcaaaatttcaggttctaca 8115707  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 50371509 - 50371613
Alignment:
Q  4 atgtcgaagaatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgagg 103  Q
    |||| ||| ||||||||||||||||||||||||  |||||||   ||||||||||  | ||||||||| |||| |||||||||  ||||||||||| |||    
T  50371509 atgttgaaaaatataattgctaattttgttata--tgttggatgctgaatgttgataaattttggtatttgttactaatatatatctcctaaatttcagg 50371606  T
Q  104 ttctaca 110  Q
    |||||||    
T  50371607 ttctaca 50371613  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 9925478 - 9925639
Alignment:
Q  4 atgtcgaagaatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaa-tttgag 102  Q
    |||| ||| |||||||||| ||||||||||||||  |||| || |||||||||||| | ||| ||||||||| | |||||||||||||||||| ||| ||    
T  9925478 atgttgaaaaatataattgttaattttgttatat--gttgaacgttgaatgttgacaaatttaggtatatgtcgttaatatatgcctcctaaatttttag 9925575  T
Q  103 gttctacannnnnnnnaatcttcctctatacctcctaaattgcctcttgggattaaaaagtttt 166  Q
    |||||| |        | ||||||||||||||||||||||||| |||| |||||| ||||||||    
T  9925576 gttctaaatttttttcagtcttcctctatacctcctaaattgcgtcttaggattagaaagtttt 9925639  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 10390085 - 10390130
Alignment:
Q  121 tcttcctctatacctcctaaattgcctcttgggattaaaaagtttt 166  Q
    ||||||||||| |||||||||||||||||| |||||| ||| ||||    
T  10390085 tcttcctctatgcctcctaaattgcctcttaggattagaaattttt 10390130  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 17463218 - 17463322
Alignment:
Q  4 atgtcgaagaatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgagg 103  Q
    |||| ||| |||||||||||||||||||||||||  |||||   |||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||    
T  17463218 atgttgaaaaatataattgctaattttgttatat--gttgggtgttgaatgttgacaaattttggtatatattgctaatatatgcctcctaaattttagg 17463315  T
Q  104 ttctaca 110  Q
    || ||||    
T  17463316 ttttaca 17463322  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 4177569 - 4177620
Alignment:
Q  48 ttgaatgttgactagttttggtatatgttgctaatatatgcctcctaaattt 99  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  4177569 ttgaatgttgacaaattttggtatatgttactaatatatgcctcctaaattt 4177620  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 26261664 - 26261759
Alignment:
Q  13 aatataattgctaattttgttatatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 110  Q
    |||||||||| ||||||| ||||||  | ||||| |||||||||||| | |||||||||||||||| |||||||||||||||||||| | ||||||||    
T  26261664 aatataattggtaattttcttatat--ggtggacgttgaatgttgacaaattttggtatatgttgccaatatatgcctcctaaatttcaagttctaca 26261759  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 24233497 - 24233409
Alignment:
Q  13 aatataattgctaattttgtta--tatatgttggacattgaatgttgactagttttggtatatgttgctaatatatgcctcctaaattt 99  Q
    ||||||||||||||| |||||   | ||||||||||  |||||||| || | ||||||||||||||||||||||||| |||||||||||    
T  24233497 aatataattgctaatcttgtttgttgtatgttggacgatgaatgtttacaaattttggtatatgttgctaatatatgtctcctaaattt 24233409  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 29843495 - 29843449
Alignment:
Q  64 tttggtatatgttgctaatatatgcctcctaaatttgaggttctaca 110  Q
    ||||||||||||||||| ||||| |||||||||||| | ||||||||    
T  29843495 tttggtatatgttgctactatatacctcctaaatttcaagttctaca 29843449  T

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