View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_high_60 (Length: 306)

Name: NF19631_high_60
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_high_60
NF19631_high_60
[»] chr5 (1 HSPs)
chr5 (18-306)||(17492235-17492523)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 17492523 - 17492235
Alignment:
Q  18 ctaaatgatcttattcatttacctacatggggtgcaacattcacctgagacaatggaagatctaacaaatgtcatactaaaagaagattaaacatatcaa 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17492523 ctaaatgatcttattcatttacctacaaggggtgcaacattcacctgagacaatggaagatctaacaaatgtcatactaaaagaagattaaacatatcaa 17492424  T
Q  118 tagcttacctaaaagatgattgatatatatgctcatttatttcatgctttacccaaaccaaaactagacctgatcactaccctttactattcgactttaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17492423 tagcttacctaaaagatgattgatatatatgctcatttatttcatgctttacccaaaccaaaactagacctgatcactaccctttactattcgactttaa 17492324  T
Q  218 gactaatatccacacatttgcttcttctttcaagtttttaaagatgtggactctccagaaagaccgcaaacagctcatctcatattgtt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17492323 gactaatatccacacatttgcttcttctttcaagtttttaaagatgtggactctccagaaagaccgcaaacagctcatctcaaattgtt 17492235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University