View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_79 (Length: 277)
Name: NF19631_high_79
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_79 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 91 - 277
Target Start/End: Complemental strand, 12529281 - 12529095
Alignment:
| Q |
91 |
gttcatagtgaaaacttgtagtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataattatgctttaatttaaacttaaattag |
190 |
Q |
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| T |
12529281 |
gttcatagtgaaaacttgtagtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataattatgctttaatttaaacttaaactag |
12529182 |
T |
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| Q |
191 |
tttgaaattattttaatcaaataaatattatgtaagatctttattgttacttgtcaaattgctttaaaagttttcaatgcattctga |
277 |
Q |
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| T |
12529181 |
tttgaaattattttaaacaaataaatattatgtaagatctttattgttacttgtcaaattgctttaaaagttttcaatacattctga |
12529095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 150 - 277
Target Start/End: Original strand, 44668454 - 44668581
Alignment:
| Q |
150 |
agatgaaatgataattatgctttaatttaaacttaaattagtttgaaattattttaatcaaataaatattatgtaagatctttattgttacttgtcaaat |
249 |
Q |
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| T |
44668454 |
agatgaaatgataattatgctttaatttaaacttaaactagtttgaaattattttaaccaaataaatattatgtaagatctttattgttacttgtcaaat |
44668553 |
T |
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| Q |
250 |
tgctttaaaagttttcaatgcattctga |
277 |
Q |
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| T |
44668554 |
tgctttaaaagttttcaatgcattctga |
44668581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 44668364 - 44668438
Alignment:
| Q |
91 |
gttcatagtgaaaacttgtagtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataatt |
165 |
Q |
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| T |
44668364 |
gttcatagtgaaaacttgtagtataagaatttaggtatagaccatgttttaaatgtaatagatgaaatgataatt |
44668438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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