View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_high_90 (Length: 250)
Name: NF19631_high_90
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_90 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 20741026 - 20740794
Alignment:
| Q |
20 |
aggtttgaatcgttgtggaaaaagttgtaggcttagatgggctaatcatttaagacccaatttgaagaaaggtgcattttctcatgaagaagagaaactc |
119 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20741026 |
aggtttaaatcgttgtgggaaaagttgtaggcttagatgggctaatcatttaagacccaacttgaagaaaggtgcattttctcatgaagaagagaaaatc |
20740927 |
T |
|
| Q |
120 |
attgttgaactccatgctcaatttggtaacaaatgggctcgaatggctgctttggtatgtatgcatttttcttattca--tttttgtctttcctttagtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
20740926 |
attgttgaactccatgctcaatttggtaacaaatgggctcgaatggctgctttggtatgtatgcatttttcttcttcatttttttgtctttcctttagtc |
20740827 |
T |
|
| Q |
218 |
ctaacctaaactaaaaggttgttataatgcata |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
20740826 |
ctaacctaaactaaaatgttgttataatgcata |
20740794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 20733176 - 20732973
Alignment:
| Q |
16 |
atacaggtttgaatcgttgtggaaaaagttgtaggcttagatgggctaatcatttaagacccaatttgaagaaaggtgcattttctcatgaagaagagaa |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20733176 |
atacaggtttgaatcgttgtgggaaaagttgtaggcttagatgggctaatcatttaagacccaatttgaagaaaggtgcattttctcatgaagaagagaa |
20733077 |
T |
|
| Q |
116 |
actcattgttgaactccatgctcaatttggtaacaaatgggctcgaatggctgctttggtatgtatgcatttttcttattca--tttttgtctttccttt |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
20733076 |
actcattgttgaactccatgcacaatttggtaacaaatgggctcgaatggctgctttggtatgtatgcatttttcttcttcatttttttgtctttccttt |
20732977 |
T |
|
| Q |
214 |
agtc |
217 |
Q |
| |
|
|||| |
|
|
| T |
20732976 |
agtc |
20732973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 37135350 - 37135484
Alignment:
| Q |
33 |
tgtggaaaaagttgtaggcttagatgggctaatcatttaagacccaatttgaagaaaggtgcattttctcatgaagaagagaaactcattgttgaactcc |
132 |
Q |
| |
|
||||||||||| || || |||||||||||||||||| | || || ||| | || || ||| |||||||| | || ||||| ||| |||| ||||||| | |
|
|
| T |
37135350 |
tgtggaaaaagctgcagacttagatgggctaatcatctgaggccgaatcttaaaaagggttcattttctgaagaggaagaaaaaatcatcattgaacttc |
37135449 |
T |
|
| Q |
133 |
atgctcaatttggtaacaaatgggctcgaatggct |
167 |
Q |
| |
|
||||| | |||| ||||||||||||||||||||| |
|
|
| T |
37135450 |
atgctaagcttggaaacaaatgggctcgaatggct |
37135484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University