View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_high_91 (Length: 247)
Name: NF19631_high_91
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_high_91 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42577529 - 42577768
Alignment:
| Q |
1 |
caaacaacacaagagtcttcacatgggatgcctctagtagtgagattattacgagtcggcaaacattggtgtgctaaacgccaaagaaaggaccgcacct |
100 |
Q |
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| T |
42577529 |
caaacaacgcaagagtcttcacatgggatgcctctagtagtgagattattacgagtgggcaaacattggtgtgctagacgccaaagaaaggaccgctccc |
42577628 |
T |
|
| Q |
101 |
tgtgtggaattttgaggctccaaatgttcatccaaggaatatcggcttgtataggagtagatgagtgaagaaggtcaatacaaatacgatatgcagactt |
200 |
Q |
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| T |
42577629 |
tgtgagggattttgaggctccaaatgttcatccaaggaatatcagcttgtataggagtagatgagtgaagaaggtcaatacaaatacgatatgcggattt |
42577728 |
T |
|
| Q |
201 |
aactgtataatttccatcaggtgtttctttccatattctt |
240 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
42577729 |
aactgtataatttccatcaggtgttgctttccatattctt |
42577768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 51492536 - 51492772
Alignment:
| Q |
4 |
acaacacaagagtcttcacatgggatgcctctagtagtgagattattacgagtcggcaaacattggtgtgctaaacgccaaagaaaggaccgcaccttgt |
103 |
Q |
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| T |
51492536 |
acaacacaagagtcttcacatgggatgcctctagtagtgagattattacgagtgagcgaacattggtgtgctagacgccaaagaaaggaccgcaccctgt |
51492635 |
T |
|
| Q |
104 |
gtggaattttgaggctccaaatgttcatccaaggaatatcggcttgtataggagtagatgagtgaagaaggtcaatacaaatacgatatgcagacttaac |
203 |
Q |
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| T |
51492636 |
gtggaattttgaggctccaaatgttcatccaaggaatatcggcttgtacaggagtagatgagtgaataaggtcaatacaaataagatacgcggacttaac |
51492735 |
T |
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| Q |
204 |
tgtataatttccatcaggtgtttctttccatattctt |
240 |
Q |
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| T |
51492736 |
tatataatttccatcaggtgttgctttccatattctt |
51492772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 52964913 - 52965152
Alignment:
| Q |
1 |
caaacaacacaagagtcttcacatgggatgcctctagtagtgagattattacgagtcggcaaacattggtgtgctaaacgccaaagaaaggaccgcacct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||| |
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| T |
52964913 |
caaacaacacaagagtcttcacatgggatgcctctagtagtgagattattacgagtgagcaaacattgacgtgctagatgccaaagaaaggaccgcaccc |
52965012 |
T |
|
| Q |
101 |
tgtgtggaattttgaggctccaaatgttcatccaaggaatatcggcttgtataggagtagatgagtgaagaaggtcaatacaaatacgatatgcagactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
52965013 |
tgtgtggaattttgaggctccaaatgttcatccaaggaatatcggcttgtataggagtagatgagtgaaaaaggtcaatacaaatacgatatgcgaactt |
52965112 |
T |
|
| Q |
201 |
aactgtataatttccatcaggtgtttctttccatattctt |
240 |
Q |
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||||||||||||||||||||||||| ||| | |||||||| |
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| T |
52965113 |
aactgtataatttccatcaggtgttgcttccgatattctt |
52965152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 647829 - 647750
Alignment:
| Q |
19 |
tcacatgggatgcctctagtagtgagattattacgagtcggcaaacattggtgtgctaaacgccaaagaaaggaccgcac |
98 |
Q |
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||||| ||||||||||||||||||||||| | |||||| || |||||||||||||||| ||||| ||||| || ||||| |
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| T |
647829 |
tcacaagggatgcctctagtagtgagattttgacgagtgggtaaacattggtgtgctatgcgccatagaaaagagcgcac |
647750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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