View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_high_92 (Length: 246)

Name: NF19631_high_92
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_high_92
NF19631_high_92
[»] chr3 (5 HSPs)
chr3 (160-246)||(20740295-20740381)
chr3 (163-246)||(20732562-20732645)
chr3 (17-90)||(20732413-20732489)
chr3 (27-90)||(20740171-20740234)
chr3 (17-46)||(20740155-20740184)
[»] chr8 (1 HSPs)
chr8 (218-246)||(9622103-9622131)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 20740295 - 20740381
Alignment:
Q  160 gacgatcatgttcgtctgaatagagaggaagaccttgtctttgacgacgtttgattcttgtgttccagtagttctttatttcattgt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20740295 gacgatcatgttcgtctgaatagagaggaagaccttgtctttgacgacgtttgattcttgtgttccagtagttctttatttcattgt 20740381  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 20732562 - 20732645
Alignment:
Q  163 gatcatgttcgtctgaatagagaggaagaccttgtctttgacgacgtttgattcttgtgttccagtagttctttatttcattgt 246  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20732562 gatcatgttcgtctgaatagagaggaagaccttgtctttgccgacgtttgattcttgtgttccagtagttctttatttcattgt 20732645  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 20732413 - 20732489
Alignment:
Q  17 agggtgaaggtgttgatgttg---ttgttgttgatattggtggtggttttgattaaaaaactcaaactttggtgtaa 90  Q
    |||||||||||||||||||||   |||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  20732413 agggtgaaggtgttgatgttgatgttgttgttgatattggtggttgttttgatttaaaaactcaaactttggtgtaa 20732489  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 20740171 - 20740234
Alignment:
Q  27 tgttgatgttgttgttgttgatattggtggtggttttgattaaaaaactcaaactttggtgtaa 90  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  20740171 tgttgttgttgttgttgttgatattgatggtggttttgattgaaaaactcaaactttggtgtaa 20740234  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 20740155 - 20740184
Alignment:
Q  17 agggtgaaggtgttgatgttgttgttgttg 46  Q
    ||||||||||||||||||||||||||||||    
T  20740155 agggtgaaggtgttgatgttgttgttgttg 20740184  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 9622131 - 9622103
Alignment:
Q  218 tgtgttccagtagttctttatttcattgt 246  Q
    |||||||||||||||||||||||||||||    
T  9622131 tgtgttccagtagttctttatttcattgt 9622103  T

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