View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_10 (Length: 558)

Name: NF19631_low_10
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_10
NF19631_low_10
[»] chr3 (8 HSPs)
chr3 (1-507)||(6942439-6942945)
chr3 (1-372)||(6939399-6939770)
chr3 (172-460)||(6787945-6788237)
chr3 (192-380)||(8467019-8467207)
chr3 (402-523)||(8466898-8467021)
chr3 (1-93)||(6787757-6787849)
chr3 (493-534)||(6788244-6788285)
chr3 (285-374)||(11484345-11484434)
[»] chr5 (5 HSPs)
chr5 (285-370)||(28362649-28362734)
chr5 (223-364)||(4314141-4314281)
chr5 (285-363)||(1569745-1569823)
chr5 (285-343)||(6522105-6522163)
chr5 (340-380)||(35052184-35052224)
[»] chr8 (2 HSPs)
chr8 (285-366)||(5354180-5354261)
chr8 (305-367)||(5508953-5509015)
[»] chr1 (1 HSPs)
chr1 (285-366)||(34564829-34564910)
[»] chr2 (2 HSPs)
chr2 (285-361)||(33720175-33720255)
chr2 (285-392)||(6683640-6683750)
[»] chr4 (1 HSPs)
chr4 (285-358)||(48681555-48681628)
[»] chr6 (1 HSPs)
chr6 (293-370)||(1782742-1782819)


Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 6942945 - 6942439
Alignment:
Q  1 aatttcaaatctctcgctgaattcaagactgatgaaaaaagaacaaattgaccacctgccttagttctcaaagtgataagaattggaggaaagatgagta 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942945 aatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattttacacctgccttagttctcaaagtgataagaattggaggaaagatgagta 6942846  T
Q  101 gatgatgataaagaaaaatattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgtgatggcgactg 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6942845 gatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcatgatggcgactg 6942746  T
Q  201 ggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataataaaaaggaact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942745 ggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataataaaaaggaact 6942646  T
Q  301 gcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttcattatttgcgtttactgtttctttaatctctta 400  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||     
T  6942645 gcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattatttgcgtttactgtttctttaattttttg 6942546  T
Q  401 ttttttgaatgggtttgctgttctaacatacttatgggcaacataccatgttaacattggtagggaaaccaatctaaattgtcacattcctcttaaatct 500  Q
     ||||||||   |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |    
T  6942545 atttttgaaccagtttgctgttctaacatacttatgggtaacatgccatgttaacattggtagggaaaccaatgtaaactgttacattcctcttaaatgt 6942446  T
Q  501 ttttctt 507  Q
    |||||||    
T  6942445 ttttctt 6942439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 6939770 - 6939399
Alignment:
Q  1 aatttcaaatctctcgctgaattcaagactgatgaaaaaagaacaaattgaccacctgccttagttctcaaagtgataagaattggaggaaagatgagta 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  6939770 aatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattgaacacctgccttagttctcaaagtgataagaattggaggaaatatgagta 6939671  T
Q  101 gatgatgataaagaaaaatattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgtgatggcgactg 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6939670 gatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaatggagcataaggaacaatggtatcatagtttgttgcgtgatggcgactg 6939571  T
Q  201 ggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataataaaaaggaact 300  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6939570 ggggtacggttcacggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactctttctctcataataaaaaggaact 6939471  T
Q  301 gcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttcattat 372  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6939470 gcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattat 6939399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 172 - 460
Target Start/End: Original strand, 6787945 - 6788237
Alignment:
Q  172 tatcatagtttgttgcgtgatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtgttta----tacacaagttgtgcattgtaa 267  Q
    ||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  6787945 tatcatagtttgttgtgtaatggcgactgggggtatggttcaggggtgatgttgtaatctggacaatagtgtttaattatacacaagttgtgcattgtaa 6788044  T
Q  268 acattactctttctctcataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttc 367  Q
    || ||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||     
T  6788045 accttaatctttcactcataataaaaaggaactgcagcttctctgcagtcggagatgtaggcaatattggccgaacttcgttaccaaacatcgtgtgttt 6788144  T
Q  368 attatttgcgtttactgtttctttaatctcttattttttgaatgggtttgctgttctaacatacttatgggcaacataccatgttaacattgg 460  Q
    |||||||||||||||| | ||||| |||| ||  |||||||| |||||||||| ||||||||||||||||||||| |  |||||| |||||||    
T  6788145 attatttgcgtttactttgtcttttatcttttgatttttgaacgggtttgctgatctaacatacttatgggcaacgtgacatgttcacattgg 6788237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 192 - 380
Target Start/End: Complemental strand, 8467207 - 8467019
Alignment:
Q  192 tggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataataa 291  Q
    ||||||| ||||||||||||| ||| ||||||||||||| | |   |||| ||||   | |||||||||| |||||||  || ||||||  | ||||||     
T  8467207 tggcgacagggggtacggttctgggatgatgttgtaatcagaattgtagtatttaagtataagttgtgcactgtaaaccctaatctttcattgataatac 8467108  T
Q  292 aaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttcattatttgcgttt 380  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||  |||||| ||||    
T  8467107 aaaggaactgcagcttctctacagtcggagacgtaggcaatattggccgaacttcgttaccaaacattgtgttttcgctatttgtgttt 8467019  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 402 - 523
Target Start/End: Complemental strand, 8467021 - 8466898
Alignment:
Q  402 tttttgaatgggtttgctgttctaacatac--ttatgggcaacataccatgttaacattggtagggaaaccaatctaaattgtcacattcctcttaaatc 499  Q
    ||||||||  |||||||||||||||||||   |||| ||||||| || ||||| ||||||| |||||| ||| | |||| ||||||||||| || |||||    
T  8467021 tttttgaactggtttgctgttctaacatatatttattggcaacacacaatgtttacattggaagggaatccattttaaactgtcacattccactcaaatc 8466922  T
Q  500 tttttcttcgctctattgttctct 523  Q
    ||||||||| ||||||| ||||||    
T  8466921 tttttcttccctctatttttctct 8466898  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6787757 - 6787849
Alignment:
Q  1 aatttcaaatctctcgctgaattcaagactgatgaaaaaagaacaaattgaccacctgccttagttctcaaagtgataagaattggaggaaag 93  Q
    |||| |||||||||||||||||| ||||||||| ||   |||||||||||| ||| |||||  |||| |||| |||||||||||| |||||||    
T  6787757 aattgcaaatctctcgctgaattgaagactgattaagcgagaacaaattgaacacttgcctatgttcccaaactgataagaattgaaggaaag 6787849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 6788244 - 6788285
Alignment:
Q  493 ttaaatctttttcttcgctctattgttctctaattgttttgt 534  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  6788244 ttaaatctttttcttcgatctattgttctctaattgtgttgt 6788285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 11484434 - 11484345
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttcattattt 374  Q
    |||||| |||||||||| ||  ||| || ||| ||| | ||| |||| |||  |||||||| ||||||||||||||||||||||||||||    
T  11484434 ataatacaaaggaactgtagtcgctttggagttggatatgtaggcaaaatttactgaactttgttaccaaacatcgtgtgttcattattt 11484345  T

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Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 28362649 - 28362734
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttcatt 370  Q
    |||||| |||||||||||||||||||||||||| ||||| || |||| ||||| | ||||| ||||||||||||||||||||||||    
T  28362649 ataatacaaaggaactgcagctgctctgcagtctgagacataggcaaaattggttaaactttgttaccaaacatcgtgtgttcatt 28362734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 364
Target Start/End: Complemental strand, 4314281 - 4314141
Alignment:
Q  223 ttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataataaaaaggaactgcagctgctctgcagtcggaga 322  Q
    |||||||||||||  |||| |||| | ||||||| | ||||||||||   | |||||| || |||||| ||  |||||||||||||||||||||| ||||    
T  4314281 ttgtaatctggaccgtagtatttaaatacaagttctacattgtaaacccaaatctttcgctgataatacaacagaactgcagctgctctgcagtcagaga 4314182  T
Q  323 cgtaagcaatattggctgaacttcgttaccaaacatcgtgtg 364  Q
     |||| ||| ||||||  |||||| ||||||||  |||||||    
T  4314181 tgtaa-caaaattggccaaacttctttaccaaaattcgtgtg 4314141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 1569745 - 1569823
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgt 363  Q
    |||||| ||| ||||||||| | || |||||||||||||||| |||| |||| |||||||||||| ||| |||| ||||    
T  1569745 ataatacaaatgaactgcagttcctttgcagtcggagacgtaggcaaaattgtctgaacttcgtttccagacattgtgt 1569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 6522163 - 6522105
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaac 343  Q
    |||||| ||||| ||| |||||||||||||||| |||||||| |||  |||||||||||    
T  6522163 ataatagaaaggtactacagctgctctgcagtctgagacgtaggcacaattggctgaac 6522105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 35052184 - 35052224
Alignment:
Q  340 gaacttcgttaccaaacatcgtgtgttcattatttgcgttt 380  Q
    ||||||| |||||||||| |||||||||||| |||||||||    
T  35052184 gaacttcattaccaaacaacgtgtgttcattgtttgcgttt 35052224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 5354261 - 5354180
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgtt 366  Q
    |||||| ||||||||| |||||||| || |||| |||| ||| |||| |||||| ||||||||||||||||||| |||||||    
T  5354261 ataatacaaaggaactacagctgctttgtagtcagagaagtaggcaaaattggccgaacttcgttaccaaacattgtgtgtt 5354180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 5509015 - 5508953
Alignment:
Q  305 ctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttc 367  Q
    |||||||||||| ||||  ||| |||| |||||||||| ||||||||||| ||| ||||||||    
T  5509015 ctgctctgcagttggaggtgtaggcaaaattggctgaatttcgttaccaagcattgtgtgttc 5508953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 34564829 - 34564910
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgtt 366  Q
    |||||| |||||| || || | ||||| |||||||||||||| ||||  ||||| |||||||||||||||||||||||||||    
T  34564829 ataatagaaaggacctacaccagctctacagtcggagacgtaggcaaatttggccgaacttcgttaccaaacatcgtgtgtt 34564910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 33720175 - 33720255
Alignment:
Q  285 ataataaaaaggaactgcagctgctc----tgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgt 361  Q
    |||||| |||||||||||||||||||    |||||||||||| ||| |||| |||||| ||||||||||| ||||||||||    
T  33720175 ataatagaaaggaactgcagctgctcgctctgcagtcggagatgtaggcaaaattggccgaacttcgttatcaaacatcgt 33720255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 392
Target Start/End: Complemental strand, 6683750 - 6683640
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctg----aacttcgttaccaaacatcgtgtgttcattatttgcgttt 380  Q
    |||||| ||||||||||||||||||||||||||| |||  || |||| ||| ||||    || |||||| |||||||| ||||||||||| ||||||||     
T  6683750 ataatacaaaggaactgcagctgctctgcagtcgaagatataggcaaaattagctgatcaaatttcgtttccaaacat-gtgtgttcattgtttgcgttc 6683652  T
Q  381 actgtttcttta 392  Q
    |  |||||||||    
T  6683651 atcgtttcttta 6683640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 48681555 - 48681628
Alignment:
Q  285 ataataaaaaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacat 358  Q
    |||||| ||||||||||||||  ||||||| ||||||||| |  ||| |||||| ||||||| |||||||||||    
T  48681555 ataatataaaggaactgcagccactctgcattcggagacgcagacaaaattggccgaacttcattaccaaacat 48681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 1782742 - 1782819
Alignment:
Q  293 aaggaactgcagctgctctgcagtcggagacgtaagcaatattggctgaacttcgttaccaaacatcgtgtgttcatt 370  Q
    ||||||||||| |  ||||||||||||||| ||  |||| ||||||  |||||| ||||||||||| || ||||||||    
T  1782742 aaggaactgcaaccactctgcagtcggagaggttggcaaaattggccaaacttcattaccaaacattgtatgttcatt 1782819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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