View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_102 (Length: 239)
Name: NF19631_low_102
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_102 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 44944006 - 44944225
Alignment:
| Q |
13 |
atactttcctgaagatgaaattataaattaaaatgttaagtggatcatactagagaacactaaatcctatccatctaaaattttgatcactgaaaaaaca |
112 |
Q |
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| T |
44944006 |
atactttcctgaagatgaaattataaattaaaatgttaaatggatcatactagagaacattaaatcctatccatctaaaattttgatcactgaaaaaaca |
44944105 |
T |
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| Q |
113 |
aaatagtcacgatgacaagtcaatatgcacaatgtagacaaaatgatcattattttaagtcatccatatgactgtctatg----------acacctaaga |
202 |
Q |
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| T |
44944106 |
aaataggcacgatgacaagtcaatatgcacaatgtagacaaaatgatcattattttaaggcatccatatgactgtctatgacaactccaaacacctaaga |
44944205 |
T |
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| Q |
203 |
agcagaagaaaccaaaatcc |
222 |
Q |
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|||||||||||||||||||| |
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| T |
44944206 |
agcagaagaaaccaaaatcc |
44944225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 44949923 - 44950086
Alignment:
| Q |
13 |
atactttcctgaagatgaaattataaattaaaatgttaagtggatcatactagagaacactaaatc-ctatccatctaaaattttgatcactgaaaaaac |
111 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||| | | | |||||||||||||||||||| || ||||||| |
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| T |
44949923 |
atactttcccgaagatgaaattataaattaaaacgttaagtcaatcataatagagaacctttgaacactatccatctaaaattttgaacatggaaaaaat |
44950022 |
T |
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| Q |
112 |
aaaatagtcacgatgacaagtcaatatgcacaatgtagacaaaatgatcattattttaagtcatc |
176 |
Q |
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| T |
44950023 |
gaaataggcactatgacaagtcattatg-acaatgtagacaaaatgatcattattttaagacatc |
44950086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 6470769 - 6470926
Alignment:
| Q |
17 |
tttcctgaagatgaaattataaattaaaatgttaagtggatca-tactagagaa-cactaaatcctatccatctaaaattttg-atcactgaaaaaacaa |
113 |
Q |
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||||||||| ||||| ||||||||||||||| | |||| |||| || || |||| | | || ||||||| ||| |||||||| | || |||||||||| |
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| T |
6470769 |
tttcctgaaaatgaagttataaattaaaatggtgagtgaatcaataataaagaatctttcaaccctatccgtctcaaattttggaacatggaaaaaacaa |
6470868 |
T |
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| Q |
114 |
aatagtcacgatgacaagtcaatatgcacaatgtagacaaaatgatc-attattttaa |
170 |
Q |
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| T |
6470869 |
aataggcactatgacaagtcaatatgcattatgtacacaaaatgatcaattattttaa |
6470926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 418957 - 418925
Alignment:
| Q |
17 |
tttcctgaagatgaaattataaattaaaatgtt |
49 |
Q |
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| T |
418957 |
tttcctgaaaatgaaattataaattaaaatgtt |
418925 |
T |
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