View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_106 (Length: 231)
Name: NF19631_low_106
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_106 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 33539890 - 33540084
Alignment:
| Q |
19 |
caatccgaaacccaaatttcaaataagacgttttgatgttcaaatttgctaattattgaagctactctatataatgcatgttttgggttatttactctag |
118 |
Q |
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| T |
33539890 |
caatccgaaacccaaattccaaataagacgttttgatgatcaaatttgctaattattgaagctactctatataatgcatgttttgggttatttactctag |
33539989 |
T |
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| Q |
119 |
taactattgttattatgctaactcttccttttggcctagcttttattcagaacattcactagcctaacctaggaaacatttatgaatagggtttc |
213 |
Q |
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| T |
33539990 |
taactattgttattgtgctaactcttccttttggcctagcttttattcagaacattcactagcctaacttaggaaacatttataaatagggtttc |
33540084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 33535863 - 33535950
Alignment:
| Q |
123 |
tattgttattatgctaactcttccttttggcctagcttttattcagaacattcactagcctaacctaggaaacatttatgaatagggt |
210 |
Q |
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| T |
33535863 |
tattgttactgtgctaactcttccttttggccctccttttattcagaacattcactagcctaacctaggaaacatttatgaatagggt |
33535950 |
T |
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